Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M14
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68390.1 68414.m07813 expressed protein contains Pfam profile...    27   5.2  
At4g38350.1 68417.m05422 patched family protein similar to SP|O1...    26   9.0  

>At1g68390.1 68414.m07813 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function,
           DUF266; expression supported by MPSS
          Length = 408

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 107 SNSLXXXXXXXTTKCTNFIFYSYYRIYTYIFIYCLQFFLNMYCHA 241
           S+SL       TTK  N  ++ +  + +Y  I C    + +  H+
Sbjct: 9   SSSLSSSSPSLTTKLLNAQYHHFLNLLSYSLILCCGIIIGILLHS 53


>At4g38350.1 68417.m05422 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (PID:g2276463); contains Pfam profile PF02460
           Patched family
          Length = 1064

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 117 CFFFSFFLQQNVQILFFIPITAFIRTFLY 203
           C  FS F    + + FF+ ITAF+   ++
Sbjct: 689 CRIFSMFAALAIMLDFFLQITAFVALIVF 717


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,041,486
Number of Sequences: 28952
Number of extensions: 118726
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)