Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M12
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    77   1e-15
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    29   0.30 
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    25   4.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   8.6  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    24   8.6  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    24   8.6  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 55/111 (49%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
 Frame = +3

Query: 114 LATKAVANNTSEKLPI---ISGALVNKRDYAA-KTSXXXXXXXXXXXXXXXXXXFED--N 275
           LATK     TS KLP    ++ A  N   YA+ + +                  FED  +
Sbjct: 15  LATKQSFVKTSYKLPRKSWLNTAKFNTIRYASTEAAKHNKGSIKQVIGAVVDCQFEDADS 74

Query: 276 LPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDS 425
           LP ILNALEV+   + RLVLEVAQH+GENTVRTIAMDGTEGLVRG  V D+
Sbjct: 75  LPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 48  KLLNIRSKYTTKMFSTVCRAGRLATKAVANNTSEKLPIISGALVN 182
           + LNIRS    +   ++CR   L    ++ N  ++LP   GAL+N
Sbjct: 78  RYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMN 122


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 312 RSPRLVLEVAQHLGENTVRTIAMD 383
           R+P LVL+ A  LGEN    +  D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 270  DNLPPILNALEVQNRSPRLVLEVAQHLGENTV 365
            D +  I NAL+ Q RSP L  E+   + +N +
Sbjct: 2290 DFVTQISNALQAQLRSPVLSEELGMQVAKNLI 2321


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 175 RAPEIIGNFSEVLLATAFVARRPALQTVENIFVVYFDR 62
           ++ +I+    EV LAT  + R      +EN+F V F +
Sbjct: 454 KSSDIVVAAEEVKLATEDIGRVTGAVDMENVFSVIFSK 491


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 267 EDNLPPILNALEVQNRSPRLVLE 335
           +DN+  +L+ALE+QN   +  +E
Sbjct: 59  DDNVETLLSALEIQNEKSKQQVE 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,614
Number of Sequences: 5004
Number of extensions: 34710
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)