Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M12
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.51
10_05_0004 + 7717748-7717798,7718107-7718317,7719424-7720079,772... 30 0.68
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 30 0.90
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 29 1.6
05_03_0458 + 14280953-14281866,14281964-14282912 29 2.1
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 28 2.7
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649... 27 4.8
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669... 27 4.8
03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967... 27 6.3
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 30.7 bits (66), Expect = 0.51
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFR 287
G PR SPS P + PKC G FCT F+
Sbjct: 873 GRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCTQDCFK 913
>10_05_0004 +
7717748-7717798,7718107-7718317,7719424-7720079,
7721296-7721469,7721562-7721678,7722820-7722999,
7723244-7723290,7724068-7724401
Length = 589
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 400 TSPSVPSIAMVRTVFSPKCCATSSTSRG 317
TS S P+++ VR +P C ATSS S G
Sbjct: 50 TSTSPPTVSSVRQEIAPCCIATSSASDG 77
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 29.9 bits (64), Expect = 0.90
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 273 NLPPILNALEVQNRSPRL-VLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDS 425
NLPP+L ++ +N + +L+ GEN +R T + + +H++
Sbjct: 2825 NLPPLLEVMQARNPGTHMAILDEVNEYGENVLRRAFWSHTPCTLESKDLHEA 2876
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 397 SPSVPSIAMVRTVFSPKCCATS 332
+P+ PS A VR SP+CC+ S
Sbjct: 2 APTAPSPASVRAAASPRCCSRS 23
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 406 PRTSPSVPSIAMV---RTVFSPKCCATSSTSRGERFCTSSA 293
P TSPS S+ V R+ S KC A +S RF +SS+
Sbjct: 97 PTTSPSASSLPPVPTPRSASSSKCSAPTSAQTPTRFLSSSS 137
>04_04_0350 +
24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 103 LQTVENIFVVYFDRIFSNL*EKSRIYVTTQCRL 5
+QT E+ +V +DR+ S + ++ R+ TQC+L
Sbjct: 806 IQTPEDTYV--YDRVISTIFDEERLIAKTQCQL 836
>06_03_0577 +
22461831-22462023,22462378-22463160,22463380-22464936,
22465082-22465449
Length = 966
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 210 LKFWLHNHVCSQELQKLLVIFQK 142
L+ WLH H+ Q Q +L I+QK
Sbjct: 745 LEKWLHTHIDEQSDQSVLNIYQK 767
>02_05_0561 -
29965968-29966326,29966375-29966414,29966877-29966951,
29967003-29967107,29967453-29967592,29967691-29967775
Length = 267
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 39 FSYKLLNIRSKYTTKMFSTVCRAGRLATKAVANNTSEKLPIISGA 173
FSY +N+ KY +F+ CR G+L S+K ++S A
Sbjct: 203 FSY--INLYGKYPPGLFANECREGKLGLS--CEGVSQKDSVVSSA 243
>03_05_0813 -
27894593-27894915,27896164-27896422,27896513-27896728,
27896920-27897625,27897895-27898100
Length = 569
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -3
Query: 270 LRTVRQPQHR*L-QPPYLGLC---LKFWLHNHVCSQELQKLLVIF 148
LR +QP+ + L Y+ LC KFWLH+ + + ++ L F
Sbjct: 328 LRHQQQPEPKRLCNDAYIALCHRRFKFWLHHDLVCKNVEVALATF 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,930,429
Number of Sequences: 37544
Number of extensions: 229625
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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