Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M12
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                96   9e-21
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   27   6.5  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         27   6.5  
SB_45437| Best HMM Match : Ribosomal_L15e (HMM E-Value=0.53)           27   8.6  
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               27   8.6  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 96.3 bits (229), Expect = 9e-21
 Identities = 43/54 (79%), Positives = 51/54 (94%)
 Frame = +3

Query: 264 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDS 425
           F+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ   D+
Sbjct: 88  FDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDT 141


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 30  IRDFSYKLLNIRSKYTTKMFSTVCRAGRLATKAVANNTSEKLPIIS 167
           IR+  +  L +  +Y+ KMFS   R     +  ++  T E +P+++
Sbjct: 463 IRERVFSGLEVYRQYSVKMFSYTVRGHGTISNMLSGYTGELVPVVA 508


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 264 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGT 389
           F++++ P+LN L +  +S  L L   ++ G N V     +GT
Sbjct: 174 FQESVCPVLNTLTLHIKSSELDLNRPRNRGSNKVENGKNEGT 215


>SB_45437| Best HMM Match : Ribosomal_L15e (HMM E-Value=0.53)
          Length = 273

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 250 WLTYSSKTTFLPF*MHSRYRTAHRDSCWRSRSTWVKTRSEPLLWTVPRG*CA 405
           WLT  ++ ++    M  RY T    +CW  RS     R+  LL  + +G CA
Sbjct: 205 WLTNGAEISWK---MPGRYLTGKLRNCWEGRS----VRASSLLRQLAKGGCA 249


>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 139 LLATAFVARRPALQTVENIFVV 74
           +L  A V R+P+L+TV N+F+V
Sbjct: 239 ILICAAVYRKPSLRTVTNMFIV 260


>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 22  LRKFVTFLINY*IFDRNIQ 78
           L+KFVTFL+NY  + R I+
Sbjct: 121 LQKFVTFLLNYERYSRKIK 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,710,125
Number of Sequences: 59808
Number of extensions: 265368
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)