Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M12
         (425 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03559-1|CAA27246.1|  539|Homo sapiens protein ( Human mRNA for ...    95   1e-19
M27132-1|AAA51809.1|  529|Homo sapiens ATP synthase beta subunit...    95   1e-19
M19483-1|AAA51808.1|  529|Homo sapiens ATPSB protein.                  95   1e-19
D00022-1|BAA00016.1|  539|Homo sapiens F1 beta subunit protein.        95   1e-19
BC016512-1|AAH16512.1|  529|Homo sapiens ATP synthase, H+ transp...    95   1e-19
DQ403107-1|ABD77240.1|  445|Homo sapiens mitochondrial ATP synth...    93   4e-19
AY496232-1|AAS77218.1|  211|Homo sapiens truncated alpha-1,4-gal...    31   1.2  

>X03559-1|CAA27246.1|  539|Homo sapiens protein ( Human mRNA for
           F1-ATPase beta subunit (F-1 beta). ).
          Length = 539

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 52/85 (61%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
 Frame = +3

Query: 186 RDYAAKTSXXXXXXXXXXXXXXXXXX-----FEDNLPPILNALEVQNRSPRLVLEVAQHL 350
           RDYAA+TS                       F++ LPPILNALEVQ R  RLVLEVAQHL
Sbjct: 54  RDYAAQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHL 113

Query: 351 GENTVRTIAMDGTEGLVRGQPVHDS 425
           GE+TVRTIAMDGTEGLVRGQ V DS
Sbjct: 114 GESTVRTIAMDGTEGLVRGQKVLDS 138


>M27132-1|AAA51809.1|  529|Homo sapiens ATP synthase beta subunit
           precursor protein.
          Length = 529

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 52/85 (61%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
 Frame = +3

Query: 186 RDYAAKTSXXXXXXXXXXXXXXXXXX-----FEDNLPPILNALEVQNRSPRLVLEVAQHL 350
           RDYAA+TS                       F++ LPPILNALEVQ R  RLVLEVAQHL
Sbjct: 44  RDYAAQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHL 103

Query: 351 GENTVRTIAMDGTEGLVRGQPVHDS 425
           GE+TVRTIAMDGTEGLVRGQ V DS
Sbjct: 104 GESTVRTIAMDGTEGLVRGQKVLDS 128


>M19483-1|AAA51808.1|  529|Homo sapiens ATPSB protein.
          Length = 529

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 52/85 (61%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
 Frame = +3

Query: 186 RDYAAKTSXXXXXXXXXXXXXXXXXX-----FEDNLPPILNALEVQNRSPRLVLEVAQHL 350
           RDYAA+TS                       F++ LPPILNALEVQ R  RLVLEVAQHL
Sbjct: 44  RDYAAQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHL 103

Query: 351 GENTVRTIAMDGTEGLVRGQPVHDS 425
           GE+TVRTIAMDGTEGLVRGQ V DS
Sbjct: 104 GESTVRTIAMDGTEGLVRGQKVLDS 128


>D00022-1|BAA00016.1|  539|Homo sapiens F1 beta subunit protein.
          Length = 539

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 52/85 (61%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
 Frame = +3

Query: 186 RDYAAKTSXXXXXXXXXXXXXXXXXX-----FEDNLPPILNALEVQNRSPRLVLEVAQHL 350
           RDYAA+TS                       F++ LPPILNALEVQ R  RLVLEVAQHL
Sbjct: 54  RDYAAQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHL 113

Query: 351 GENTVRTIAMDGTEGLVRGQPVHDS 425
           GE+TVRTIAMDGTEGLVRGQ V DS
Sbjct: 114 GESTVRTIAMDGTEGLVRGQKVLDS 138


>BC016512-1|AAH16512.1|  529|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F1 complex, beta polypeptide
           protein.
          Length = 529

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 52/85 (61%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
 Frame = +3

Query: 186 RDYAAKTSXXXXXXXXXXXXXXXXXX-----FEDNLPPILNALEVQNRSPRLVLEVAQHL 350
           RDYAA+TS                       F++ LPPILNALEVQ R  RLVLEVAQHL
Sbjct: 44  RDYAAQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHL 103

Query: 351 GENTVRTIAMDGTEGLVRGQPVHDS 425
           GE+TVRTIAMDGTEGLVRGQ V DS
Sbjct: 104 GESTVRTIAMDGTEGLVRGQKVLDS 128


>DQ403107-1|ABD77240.1|  445|Homo sapiens mitochondrial ATP
           synthase, H+ transporting F1 complex beta subunit
           protein.
          Length = 445

 Score = 93.1 bits (221), Expect = 4e-19
 Identities = 45/54 (83%), Positives = 48/54 (88%)
 Frame = +3

Query: 264 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDS 425
           F++ LPPILNALEVQ R  RLVLEVAQHLGE+TVRTIAMDGTEGLVRGQ V DS
Sbjct: 11  FDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDS 64


>AY496232-1|AAS77218.1|  211|Homo sapiens truncated
           alpha-1,4-galactosyltransferase protein.
          Length = 211

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 421 SCTGCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSA 293
           +C  C  T P        R   SP CC  S T  G   C SSA
Sbjct: 153 TCGSCSGTHPWPTGTRPCRGAGSPTCCPCSPTPPGSHSCGSSA 195


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,562,103
Number of Sequences: 237096
Number of extensions: 1263159
Number of successful extensions: 6064
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6064
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)