Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M12
(425 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 95 2e-20
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 27 4.3
AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical ... 27 5.6
Z68749-7|CAA92962.2| 728|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z68749-6|CAC35818.1| 689|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z68219-9|CAA92483.2| 728|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z68219-7|CAC35827.1| 689|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical pr... 27 7.4
AY851363-1|AAW34127.1| 728|Caenorhabditis elegans fibulin-1D sp... 27 7.4
AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1 iso... 27 7.4
AF051403-1|AAC28324.1| 689|Caenorhabditis elegans fibulin-1 iso... 27 7.4
AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1 iso... 27 7.4
AF051401-1|AAC28321.1| 689|Caenorhabditis elegans fibulin-1 iso... 27 7.4
AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C pr... 27 7.4
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 94.7 bits (225), Expect = 2e-20
Identities = 51/114 (44%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Frame = +3
Query: 99 CRAGRLATKAVANNTSEKLPIISGALVNKRDYAAKTSXXXXXXXXXXXXXXXXXX----- 263
C + + +NN K I +G + A K S
Sbjct: 24 CALPAASIRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQ 83
Query: 264 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDS 425
F++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+
Sbjct: 84 FDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADT 137
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 421 SCTGCPRTSPSVPSIAMVRTVFSPK-CCATSSTSRGER 311
SCT P T P+ M T SP CC T T G+R
Sbjct: 32 SCTPPPSTCPTTCLPIMTCTPPSPPACCNTCGTCNGKR 69
>AC024772-1|AAF60536.2| 242|Caenorhabditis elegans Hypothetical
protein Y40C5A.1 protein.
Length = 242
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -1
Query: 377 SNGSDRVFTQVLRDLQHESR*AVLYLECIQNGRKVVFELYV 255
SNG R+F+ Q+E +V +EC+QN ++ L++
Sbjct: 65 SNGVYRLFSDSTIGAQNELNDSVQVMECVQNPDHILPHLHI 105
>Z68749-7|CAA92962.2| 728|Caenorhabditis elegans Hypothetical
protein F56H11.1c protein.
Length = 728
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>Z68749-6|CAC35818.1| 689|Caenorhabditis elegans Hypothetical
protein F56H11.1b protein.
Length = 689
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>Z68219-9|CAA92483.2| 728|Caenorhabditis elegans Hypothetical
protein F56H11.1c protein.
Length = 728
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>Z68219-7|CAC35827.1| 689|Caenorhabditis elegans Hypothetical
protein F56H11.1b protein.
Length = 689
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>AY851363-1|AAW34127.1| 728|Caenorhabditis elegans fibulin-1D
splice variant protein.
Length = 728
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>AF051403-1|AAC28324.1| 689|Caenorhabditis elegans fibulin-1
isoform D precursor protein.
Length = 689
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>AF051401-1|AAC28321.1| 689|Caenorhabditis elegans fibulin-1
isoform D precursor protein.
Length = 689
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
>AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C
protein.
Length = 712
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = -2
Query: 412 GCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFRMGGRLSSNC 260
G T SI +R++ C + + ++ E C S+ +GG L C
Sbjct: 44 GTSMTCQRAASICCLRSLLDNACDSGTDIAKEEESCPSNINILGGGLKKEC 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,090,957
Number of Sequences: 27780
Number of extensions: 198360
Number of successful extensions: 445
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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