Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M12
(425 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 75 2e-14
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 75 2e-14
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 75 2e-14
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.33
At1g31120.1 68414.m03808 potassium transporter family protein si... 30 0.57
At5g46200.1 68418.m05684 expressed protein contains similarity t... 28 2.3
At5g15110.1 68418.m01770 pectate lyase family protein similar to... 28 3.0
At3g11330.1 68416.m01378 leucine-rich repeat family protein 27 4.0
At2g35060.1 68415.m04301 potassium transporter family protein si... 27 4.0
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote... 27 7.0
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 27 7.0
At1g51910.1 68414.m05851 protein kinase family protein contains ... 27 7.0
At4g35870.1 68417.m05094 expressed protein 26 9.3
At4g22080.1 68417.m03193 pectate lyase family protein similar to... 26 9.3
At3g14710.1 68416.m01860 F-box family protein ; similar to SKP... 26 9.3
At2g17530.1 68415.m02028 protein kinase family protein identical... 26 9.3
At1g51130.1 68414.m05748 expressed protein similar to unknown pr... 26 9.3
At1g29180.1 68414.m03570 DC1 domain-containing protein contains ... 26 9.3
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +3
Query: 267 EDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPV 416
++ LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ V
Sbjct: 101 QEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKV 150
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +3
Query: 267 EDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPV 416
++ LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ V
Sbjct: 104 QEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKV 153
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 75.4 bits (177), Expect = 2e-14
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +3
Query: 267 EDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPV 416
++ LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ V
Sbjct: 101 QEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKV 150
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 31.1 bits (67), Expect = 0.33
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 270 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 401
+NLP + + + R +LE A GE T RT A+D EG+V
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71
>At1g31120.1 68414.m03808 potassium transporter family protein
similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
transporter [Arabidopsis thaliana]
gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
member, PMID:11500563; contains Pfam profile PF02705: K+
potassium transporter
Length = 796
Score = 30.3 bits (65), Expect = 0.57
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 75 TTKMFSTVCRAGRLATKAVANNTSEKLPIISGALVNKRDYAAKT 206
T ++S +CR +++T + T E+L S ++R +AAKT
Sbjct: 127 TFALYSLLCRHAKVSTIPNQHRTDEELTTYSRTTFHERSFAAKT 170
>At5g46200.1 68418.m05684 expressed protein contains similarity to
carboxyl-terminal proteinase contains Pfam profile
PF03080: Arabidopsis proteins of unknown function;
expression supported by MPSS
Length = 408
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 282 PILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ-PVH 419
P++ +Q R R +L + N +R I + G+E +GQ P+H
Sbjct: 44 PLMKNHRIQTRPSRELLSILSTSNGNILREIDLKGSEECPKGQVPIH 90
>At5g15110.1 68418.m01770 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 472
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 322 DSCWRSRSTWVKTRSE 369
D CWR RS W K R +
Sbjct: 125 DKCWRCRSDWAKRRKK 140
>At3g11330.1 68416.m01378 leucine-rich repeat family protein
Length = 499
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 48 KLLNIRSKYTTKMFSTVCRAGRLATKAVANNTSEKLPI-ISGALVN 182
K+LN+ + T + ++CR G L V+ N LP I LVN
Sbjct: 270 KILNVSTNKLTSLPDSICRCGSLVILDVSFNRLTYLPTNIGPELVN 315
>At2g35060.1 68415.m04301 potassium transporter family protein
similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
transporter HAK2p [Mesembryanthemum crystallinum]
gi|14091471|gb|AAK53759; KUP/HAK/KT Transporter family
member, PMID:11500563; contains Pfam profile PF02705: K+
potassium transporter
Length = 792
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 75 TTKMFSTVCRAGRLATKAVANNTSEKLPIISGALVNKRDYAAKT 206
T ++S +CR ++ T + T E+L S ++ +AAKT
Sbjct: 128 TFALYSLLCRHAKVKTIQNQHRTDEELTTYSRTTFHEHSFAAKT 171
>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
kinase, putative
Length = 812
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 90 STVCRAGRLATKAVANN-TSEKLPIIS 167
S++CR GRL A+++N S KLP +S
Sbjct: 207 SSICRIGRLTNLALSHNEISGKLPDLS 233
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +3
Query: 120 TKAVANNTSEKLPIISGALVNKRDYAAK 203
+ ++ ++TS KL +SG +++ R+YAAK
Sbjct: 9 SSSIGSSTSRKL--VSGRIISSRNYAAK 34
>At1g51910.1 68414.m05851 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 876
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 276 LPPILNALEVQNRSPRLVLEVAQ 344
LPP++NALEV L+LE Q
Sbjct: 343 LPPLINALEVYTLVENLLLETYQ 365
>At4g35870.1 68417.m05094 expressed protein
Length = 817
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 56 KYSIEIYNENVFYRLQSWPSGHEG 127
+Y ++ YN YR++ +P+G+EG
Sbjct: 701 RYIVDKYNFLYVYRVRGFPAGNEG 724
>At4g22080.1 68417.m03193 pectate lyase family protein similar to
pectate lyase 2 GP:6606534 from [Musa acuminata]
Length = 394
Score = 26.2 bits (55), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 322 DSCWRSRSTWVKTRSE 369
DSCWR +S W R +
Sbjct: 50 DSCWRLKSDWAANRKD 65
>At3g14710.1 68416.m01860 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 442
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 406 PRTSPSVPSIAMVRTVFSPKCCAT 335
PR++P+ S+ +R+V SP C T
Sbjct: 355 PRSTPTAKSLKELRSVESPDCVTT 378
>At2g17530.1 68415.m02028 protein kinase family protein identical to
SRPK2 [Arabidopsis thaliana] gi|9843645|emb|CAC03676;
contains protein kinase domain, Pfam:PF00069
Length = 440
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 211 AKPKVRWLQLSVLWLTYSSKTT 276
A+ K+ W Q S +WL Y ++T+
Sbjct: 40 AQRKLGWGQFSTVWLAYDTRTS 61
>At1g51130.1 68414.m05748 expressed protein similar to unknown
protein GI:9294403 from [Arabidopsis thaliana]
Length = 403
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 163 IIGNFSEVLLATAFVARRPALQTVENIFVVYF 68
I+G V L + RR QTVEN+F + F
Sbjct: 238 ILGKKKRVQLENLVLNRRSFAQTVENLFALSF 269
>At1g29180.1 68414.m03570 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 444
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 421 SCTGCPRTSPSVPSIAMVRTVFSPKCC 341
SCTGC + P + ++R +F C
Sbjct: 414 SCTGCRKRCPYKTVLVLIRLIFCSTFC 440
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,436,661
Number of Sequences: 28952
Number of extensions: 180105
Number of successful extensions: 378
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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