Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M11
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   208   2e-54
U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z73971-9|CAH04730.1|  522|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AY532645-1|AAS21318.1|  522|Caenorhabditis elegans egg laying de...    29   2.5  
L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell l...    28   3.3  
AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.     28   3.3  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  208 bits (507), Expect = 2e-54
 Identities = 103/145 (71%), Positives = 114/145 (78%)
 Frame = +1

Query: 64  ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKY 243
           +NW  E      +V D  P     + PE+ LFG+WS   V VSD+SL DYI VKEK AKY
Sbjct: 3   DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKY 54

Query: 244 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 423
           LPHSAGR+  +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP
Sbjct: 55  LPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENP 114

Query: 424 LQVLVTAIINSGPREDSTRIGRAGT 498
           +QVLV A+INSGPREDSTRIGRAGT
Sbjct: 115 VQVLVNAVINSGPREDSTRIGRAGT 139


>U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical
           protein F55G1.6 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 149 SNFLGDGVVMTFKYRTCLCRIIF 217
           SN+L DG V+ +K + C CR +F
Sbjct: 124 SNYLEDGDVLGYKLKPCFCRKLF 146


>Z73971-9|CAH04730.1|  522|Caenorhabditis elegans Hypothetical
           protein C50H2.2a protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 279 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 103
           SF+ VP   +W I  +L ++  NI+++ + R L        KK  F        +  + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334

Query: 102 HAARVGDFFGPVLL 61
               VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348


>Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical
           protein C50H2.2b protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 279 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 103
           SF+ VP   +W I  +L ++  NI+++ + R L        KK  F        +  + N
Sbjct: 241 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 300

Query: 102 HAARVGDFFGPVLL 61
               VGD F P+LL
Sbjct: 301 VQEAVGDVFNPLLL 314


>AY532645-1|AAS21318.1|  522|Caenorhabditis elegans egg laying
           defective EGL-47A protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 279 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 103
           SF+ VP   +W I  +L ++  NI+++ + R L        KK  F        +  + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334

Query: 102 HAARVGDFFGPVLL 61
               VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348


>L23648-7|AAA28031.2|  962|Caenorhabditis elegans Abnormal cell
           lineage protein 36 protein.
          Length = 962

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 65  RTGPKKSPTRAAWLWTTCHYHS 130
           +T P K  +R  W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275


>AF104917-1|AAD22772.1|  962|Caenorhabditis elegans LIN-36 protein.
          Length = 962

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 65  RTGPKKSPTRAAWLWTTCHYHS 130
           +T P K  +R  W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 288 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 166
           F + ++ +P  ++  I CI LF  N+IL  + R  +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 288 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 166
           F + ++ +P  ++  I CI LF  N+IL  + R  +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 84  DFFGPVLLSHISHFYSQFTNYNLAL 10
           DF  P  L ++ H YSQF N+++ L
Sbjct: 245 DFLEPDTLKNLVHKYSQFINFDIFL 269


>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 141 NISRLW*WHVVHNHAARVGDFFGPVLLSHISHF 43
           + S  W WH+   H     DFFG    S  S F
Sbjct: 42  SFSGFWHWHLTMQHCNNENDFFGSFNSSSNSPF 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,932,052
Number of Sequences: 27780
Number of extensions: 252992
Number of successful extensions: 572
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)