Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M11
(498 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 188 2e-48
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 186 7e-48
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 186 7e-48
At3g26180.2 68416.m03267 cytochrome P450 71B20, putative (CYP71B... 33 0.11
At3g26180.1 68416.m03266 cytochrome P450 71B20, putative (CYP71B... 33 0.11
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 29 2.3
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 29 2.3
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 29 2.3
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 29 2.3
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2... 28 4.0
At3g26235.1 68416.m03273 hypothetical protein 27 5.3
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi... 27 5.3
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi... 27 7.0
At5g25120.1 68418.m02976 cytochrome P450 family protein CYTOCHRO... 27 9.3
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 188 bits (457), Expect = 2e-48
Identities = 88/118 (74%), Positives = 103/118 (87%), Gaps = 1/118 (0%)
Frame = +1
Query: 145 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 321
E+KLF RWS DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 322 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAG 495
SLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAG 135
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 186 bits (453), Expect = 7e-48
Identities = 89/124 (71%), Positives = 105/124 (84%), Gaps = 1/124 (0%)
Frame = +1
Query: 127 QPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 303
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 304 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 483
VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRI
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131
Query: 484 GRAG 495
G AG
Sbjct: 132 GSAG 135
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 186 bits (453), Expect = 7e-48
Identities = 89/124 (71%), Positives = 105/124 (84%), Gaps = 1/124 (0%)
Frame = +1
Query: 127 QPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 303
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 304 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 483
VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRI
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131
Query: 484 GRAG 495
G AG
Sbjct: 132 GSAG 135
>At3g26180.2 68416.m03267 cytochrome P450 71B20, putative (CYP71B2)
identical to cytochrome P450 71B20 (SP:Q9LTM3)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 368
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 240 FCILLFYRNIILQRHVRYLNVITTPSPKKFD-FGNISRLW*WHVVHNHAARVGDFFGPVL 64
FC++ I + +++L PSP KF GN+ ++ + H + + +GPV+
Sbjct: 8 FCLITLASLIFFAKKIKHLKWNLPPSPPKFPVIGNLHQI--GELPHRSLQHLAERYGPVM 65
Query: 63 LSH 55
L H
Sbjct: 66 LLH 68
>At3g26180.1 68416.m03266 cytochrome P450 71B20, putative (CYP71B2)
identical to cytochrome P450 71B20 (SP:Q9LTM3)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 502
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 240 FCILLFYRNIILQRHVRYLNVITTPSPKKFD-FGNISRLW*WHVVHNHAARVGDFFGPVL 64
FC++ I + +++L PSP KF GN+ ++ + H + + +GPV+
Sbjct: 8 FCLITLASLIFFAKKIKHLKWNLPPSPPKFPVIGNLHQI--GELPHRSLQHLAERYGPVM 65
Query: 63 LSH 55
L H
Sbjct: 66 LLH 68
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 114 VVHNHAARVGDFFGPVLLSHISHFYSQFT 28
++ NH ++G+ + PVL H SH +F+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFS 361
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 114 VVHNHAARVGDFFGPVLLSHISHFYSQFT 28
++ NH ++G+ + PVL H SH +F+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFS 361
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 114 VVHNHAARVGDFFGPVLLSHISHFYSQFT 28
++ NH ++G+ + PVL H SH +F+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFS 361
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 114 VVHNHAARVGDFFGPVLLSHISHFYSQFT 28
++ NH ++G+ + PVL H SH +F+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFS 361
>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 783
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -2
Query: 464 LGPELIIAVTRTCRGFSPVSR*IISKACLTIRTAISFLPLLRPC 333
+ P+L++ + + F+P++ I AC+ + + + +L LL+PC
Sbjct: 1 MDPKLLLCLPQGDELFNPLNTMFIQMACILVFSQLFYL-LLKPC 43
>At3g26235.1 68416.m03273 hypothetical protein
Length = 195
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 450 NNSSHQNLQRVFTRQQVNNFKGMFNDTYSH-KFLTIIAAVHH*GVSQTLHNRALSFTESF 274
+NS+HQ + + ++Q F TYSH K + A V S++L R+LSF E
Sbjct: 68 SNSNHQLIAGLKYKRQYGYFMKNHRATYSHYKDGSSDARVE---ASKSLKTRSLSFKEEI 124
Query: 273 VSV 265
S+
Sbjct: 125 FSI 127
>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 836
Score = 27.5 bits (58), Expect = 5.3
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +1
Query: 193 DMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 372
D+S Y V + AK K+ +++ C I + N+LMM N G A
Sbjct: 240 DLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFE 299
Query: 373 IVKHAFEIIHLLTGENPLQVLVTAIINSG 459
I + + LL G + ++++ ++ SG
Sbjct: 300 IYESMEKTDSLLDG-STYELIIPSLAKSG 327
>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 749
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 250 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNG 351
HS+ + + KA P V TNSL + +NNG
Sbjct: 291 HSSAKSSRLPSLKAVSPAVTSATNSLFLDHKNNG 324
>At5g25120.1 68418.m02976 cytochrome P450 family protein CYTOCHROME
P450 71B1 - Thlaspi arvense, EMBL:L24438
Length = 496
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 252 MW*IFCILLFYRNIILQRHVRYLNVITTPSPKKFD-FGNISRLW*WHVVHNHAARVGDFF 76
+W I +F+ II+ R+ R P P + GN+ +L H+ ++ + +
Sbjct: 3 LWYIIVAFVFFSTIIIVRNTRKTKKNLPPGPPRLPIIGNLHQL--GSKPHSSMFKLSEKY 60
Query: 75 GPVL 64
GP++
Sbjct: 61 GPLM 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,197,360
Number of Sequences: 28952
Number of extensions: 233430
Number of successful extensions: 589
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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