Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M10
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 87 1e-18
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 58 7e-10
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 56 4e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 54 1e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 48 1e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 2e-06
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 43 3e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 43 3e-05
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 5e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 41 1e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 40 3e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 40 3e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 38 0.001
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.004
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.006
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.006
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 35 0.008
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.008
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.010
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.010
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.018
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.031
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 32 0.041
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.055
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.22
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.51
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 1.2
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 27 2.1
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 2.7
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 2.7
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 26 2.7
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 3.6
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 4.7
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha... 25 4.7
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 6.3
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 8.3
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 8.3
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 8.3
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.3
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 87.0 bits (206), Expect = 1e-18
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+RNL Y +E +L +LF +G L +V++PIDK + KG+ + F + AV+AY ELD
Sbjct: 326 FLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELD 385
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLS----FKEKKAKRLKAQAKSSHNWNVL 496
F GR+LH+LPAK+ + DD LS K+++ KR A S+ +WN L
Sbjct: 386 AKPFQGRLLHVLPAKA-RSSILLDDYALSKLPLKKQRELKRKNTAASSTFSWNSL 439
Score = 39.1 bits (87), Expect = 4e-04
Identities = 27/101 (26%), Positives = 46/101 (45%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
++NL + +++++ +L YG L V +P K + ++G+ F+ A A L
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVP-KKFDRSARGFAFAEFVTAREAANAMRALKN 783
Query: 347 TAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLKAQA 469
T GR L L + N + D+ EK AK A+A
Sbjct: 784 THLLGRHLVL-----QYASNATMDDMQHAIEKMAKEANAEA 819
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLP 253
V+N Y S +ELT+LF +G L + +P
Sbjct: 510 VKNFPYGTSAEELTSLFSPFGELGRILIP 538
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 58.0 bits (134), Expect = 7e-10
Identities = 32/92 (34%), Positives = 46/92 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FVRNLA+ + +LTN F GP+ + + +++GYG VTF M E A +A EL
Sbjct: 8 FVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELK 67
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKE 439
GR+L L A K D+ + K+
Sbjct: 68 NKKLHGRILRLDFATPRKRSEVDTDQNKAVKK 99
Score = 41.1 bits (92), Expect = 9e-05
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FVRNL + +EQEL N F ++GPL L D +S G G + F
Sbjct: 280 FVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 55.6 bits (128), Expect = 4e-09
Identities = 29/117 (24%), Positives = 56/117 (47%)
Frame = +2
Query: 104 IKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKG 283
+ K++ Q+ FV +A + E EL +F K+G +T V + + V S+G
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 284 YGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKR 454
+G ++F E A A L+ F GR+L++ AK + + + + + + ++ R
Sbjct: 144 FGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSR 200
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 54.0 bits (124), Expect = 1e-08
Identities = 27/119 (22%), Positives = 65/119 (54%)
Frame = +2
Query: 101 NIKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
++ +R+ Q+ +++NL ++EQE ++LF ++G +T ++L D+ N + +
Sbjct: 243 HVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPR 301
Query: 281 GYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRL 457
G+G V + E A KA EL+ + G+ L++ +++K ++ +++ K +++
Sbjct: 302 GFGFVNYANHECAQKAVDELNDKEYKGKKLYV--GRAQKKHEREEELRKRYEQMKLEKM 358
Score = 47.2 bits (107), Expect = 1e-06
Identities = 24/79 (30%), Positives = 44/79 (55%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F++NL V ++ L F +G +T + D+ +SKG+G V + PE A KA TE++
Sbjct: 367 FIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQG-KSKGFGFVCYTTPEEANKAVTEMN 425
Query: 344 GTAFCGRMLHLLPAKSEKL 400
G+ L++ A+ +++
Sbjct: 426 QRMLAGKPLYVALAQRKEV 444
Score = 39.5 bits (88), Expect = 3e-04
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V L V+E L LF GP+ + + D V +S GY V F E KA EL+
Sbjct: 83 YVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELN 142
Query: 344 GTAFCGRMLHLL 379
T GR ++
Sbjct: 143 YTLIKGRPCRIM 154
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 47.6 bits (108), Expect = 1e-06
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV N+ Y VSEQ++T +F + GP+ L +D KGYG F E A +L+
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69
Query: 344 GTAFCGRMLHLLPAKSEKLENES 412
+ R + + ++ N+S
Sbjct: 70 NSELGPRKIRVEFPSNDPRRNQS 92
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.4 bits (105), Expect = 2e-06
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L++ V +Q L FE+YG + + +D + +SKGYG V F PE A KA +
Sbjct: 266 FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE-AAKAAVAAN 324
Query: 344 GT-AFCGRMLHL 376
GT GRM++L
Sbjct: 325 GTKEIDGRMVNL 336
Score = 42.7 bits (96), Expect = 3e-05
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL++ +E +L+ F G + + LP D + + KG+G VTF + A K E++
Sbjct: 369 FVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC-VEMN 427
Query: 344 GTAFCGRMLHL 376
G GR L
Sbjct: 428 GHFIAGRPCRL 438
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 42.7 bits (96), Expect = 3e-05
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 164 FVRNLA--YVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
FV+NL V + Q+L LF K+G + L SKGYG V+F P AV+A
Sbjct: 422 FVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINT 481
Query: 338 LDGTAF 355
L+G F
Sbjct: 482 LNGVLF 487
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 42.7 bits (96), Expect = 3e-05
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V NL+ E+EL +LF ++G + V L DK ++KG+ V++ + A+KA LDG
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 41.9 bits (94), Expect = 5e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N+ Y ++E+++ ++F++ GP+ L ID + Q KGYG + P A A L+
Sbjct: 8 YVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLN 67
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV LA ++ +EL + FE+ GP+ + + DK++ +SKG V F E +V+A L
Sbjct: 243 FVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIALS 301
Query: 344 GTAFCGRMLHLLPAKSEK 397
G G + + ++EK
Sbjct: 302 GKRLLGLPVIVQLTEAEK 319
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 39.5 bits (88), Expect = 3e-04
Identities = 24/90 (26%), Positives = 48/90 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F++NL++ ++ +E+ +LF +YGP+ ++ L + V Q++G V + + A +A +L
Sbjct: 15 FIKNLSFKITAEEMYDLFGRYGPVRQIRLG-NTV--QTRGTAFVVYENVQDARRACEKLS 71
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSF 433
G F R L + E+ + + D F
Sbjct: 72 GYNFMDRYLVVHYYNPERAKVDGQDLAARF 101
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ L+Y E ++ F +YGP+ + + +KV +S GY V F AY
Sbjct: 103 FLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASA 162
Query: 344 GTAFCGRML 370
G GR +
Sbjct: 163 GLMLNGRRI 171
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 37.5 bits (83), Expect = 0.001
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPE-HAVKAYTEL 340
FV NL S + L F++ G + V +P DK + + KGY V F+ P+ + +
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKF 154
Query: 341 DGTAFCGRMLHL-LPA----KSEKLENESDDEGLSFKEKKAKRLKAQAKSS 478
T + R +++ L A K+E N+ ++ +KE+ +R+ ++ + +
Sbjct: 155 HHTIYKERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVASEEQQA 205
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEK-YGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
V NL V+E ++ LF K GP V+L N +SKG T+ F P A +AY + +
Sbjct: 59 VSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGP-NGRSKGIATIIFSRPGDATRAYEQYE 117
Query: 344 G 346
G
Sbjct: 118 G 118
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.5 bits (78), Expect = 0.004
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V NL V+++ + +F YG + + +PI K + +KGY + ++ + A A +++
Sbjct: 103 VENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNN 162
Query: 347 TAFCGRML 370
G L
Sbjct: 163 AELDGEEL 170
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.1 bits (77), Expect = 0.006
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
+E+++ +LF +GP+ ++L +D+ KGY + + E A KA E
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDE 70
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.1 bits (77), Expect = 0.006
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Frame = +2
Query: 119 EQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK----GY 286
EQ+N FV L+ + E+ +LFE G + +V +P +V ++ G
Sbjct: 32 EQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGI 91
Query: 287 GTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAK 388
VTF E KA L+G R + + A+
Sbjct: 92 AFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.7 bits (76), Expect = 0.008
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ NL + E ++ L + +G L L + + SKG+ F P A A + LD
Sbjct: 313 YISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLD 372
Query: 344 GTAFCGRMLH 373
G G LH
Sbjct: 373 GKDTYGNKLH 382
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.008
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L+ VSE+EL LF+ +G + V +P KG G V F+ + A A +L
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 344 G 346
G
Sbjct: 360 G 360
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.3 bits (75), Expect = 0.010
Identities = 17/85 (20%), Positives = 40/85 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ NL + ++E ++ +F ++G ++NL DK +SKG+ + + V A +
Sbjct: 34 YIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMT 93
Query: 344 GTAFCGRMLHLLPAKSEKLENESDD 418
R++ + S K+ + +
Sbjct: 94 NVKLLDRLVRVDHVASYKVPQKEKE 118
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 34.3 bits (75), Expect = 0.010
Identities = 25/70 (35%), Positives = 32/70 (45%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V N+ V+E L +LFE YG L V V H V F+ A KA L+G
Sbjct: 878 VTNVDGTVNEARLRSLFESYGKLYRV------VLHPEHEGAVVEFLDIHDAGKASLALEG 931
Query: 347 TAFCGRMLHL 376
GR+LH+
Sbjct: 932 HEIGGRLLHI 941
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.5 bits (73), Expect = 0.018
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPE 313
F+ L + ++ L + FE++G + + + D +S+G+G +TF P+
Sbjct: 166 FIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
Score = 33.5 bits (73), Expect = 0.018
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV + +E+E N F ++G + + L +DK + +G+G VT+ E AV+A
Sbjct: 250 FVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEA 303
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.031
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NLA+ E+ L F G + V + D + KG+ + F KA +
Sbjct: 273 FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
Query: 344 GTAFCGRMLHLLPAKSEK----LENESDDEGLSFKEKKAKRLKAQA 469
GR L ++ AKS K ++ DE + +A++L +A
Sbjct: 333 KKMPEGRTLRIMRAKSTKPKSITRSKRGDEKTRTLQGRARKLIGKA 378
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 32.3 bits (70), Expect = 0.041
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 188 VSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRM 367
+S++ L +F+ YGPL ++ L K N YG V F E +A G G+
Sbjct: 375 LSKRNLWKVFKIYGPLAQIVL---KAN-----YGFVQFFTNEDCARALNAEQGNFVRGQK 426
Query: 368 LHLLPAKSEK 397
LHL +K +K
Sbjct: 427 LHLEISKIQK 436
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.055
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ NL V++ L L + GP+ +++P D+V + G+G F+ + A L+
Sbjct: 14 YLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILN 73
Query: 344 GTAFCGRMLHLLPAKSEK 397
G+ + + A ++
Sbjct: 74 QVKLFGKPIRVNRASQDR 91
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.22
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL+Y V EL + G + + ++ N SKG + + E A A L
Sbjct: 69 YVGNLSYQVRWFELKEFMGQVGNVLNCEI-LNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 344 GTAFCGRMLHL 376
F GR++++
Sbjct: 128 NQKFMGRLVYI 138
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.51
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 197 QELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
+EL FE +GPL ++PI + S+ + V + A AY E+ G
Sbjct: 21 RELAYEFEPFGPLIRCDIPIPR-TRTSRPFAFVEYEDSRDAEDAYYEVHG 69
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/97 (20%), Positives = 39/97 (40%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + + +++ + F+ YG + + L G+G V A +
Sbjct: 7 FVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIVNDFQ 58
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKR 454
G F G + + PA+ E+ E+ E + K + +R
Sbjct: 59 GKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRR 95
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 251 PIDKVNHQSKGYGTVTFMMPEHAVKAY 331
PI ++ +K YG +TF+ HAV Y
Sbjct: 324 PISEICDLAKKYGAITFLDEVHAVGMY 350
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 2.7
Identities = 28/99 (28%), Positives = 41/99 (41%)
Frame = +2
Query: 194 EQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLH 373
+ ++T EK G +T V L DK + G TV F E A + G F GR++
Sbjct: 273 KDDITEEAEKCGRVTNVVL-YDK---EPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVE 328
Query: 374 LLPAKSEKLENESDDEGLSFKEKKAKRLKAQAKSSHNWN 490
+ +S L +E + KRL+ A N N
Sbjct: 329 ASIYDGKVRFQKSGKHTLDDEEDEEKRLEKFADWLENSN 367
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 26.2 bits (55), Expect = 2.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 326 AYTELDGTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAK 451
A LD + + H+ P+KS +LEN D+ +EKK +
Sbjct: 822 AAMNLDAYRYIVKNEHVRPSKSSELENLLKDDSWWQEEKKRR 863
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 380 PAKSEKLENESDDEGLSFKEKKAK 451
PA + +LEN+SDD LS K K
Sbjct: 512 PANTLELENDSDDNALSNSNGKRK 535
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 3.6
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Frame = +2
Query: 188 VSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGT-AFCGR 364
+++Q N+F +VN KV QS G T M H+ Y+ L + GR
Sbjct: 45 IADQWWDNVFSAQLQSIQVNTDNGKVAVQSNGVSTKLRMAKYHS--KYSALSSVFRYAGR 102
Query: 365 MLHLLPAKSEKLENESDDEGLS-FKEKKAKRLKAQAKSS 478
L E L ++S D +S KK K K K S
Sbjct: 103 ---LCGTFEEDLVDKSLDSSVSPVSSKKVKVRKTSGKES 138
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 380 PAKSEKLENESDDEGLSFKEKKAKRLKAQAKSS 478
P K + + E + F+EK+AKR+K Q S+
Sbjct: 197 PGIGRKSQRFIELEKMLFEEKRAKRIKKQGAST 229
>SPAC29B12.04 |snz1||pyridoxine biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 176 LAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFM 304
+ + V Q L ++ Y +EV P D +NH K TV F+
Sbjct: 86 IGHFVEAQILESIGVDYIDESEVLTPADDINHIEKSKFTVPFV 128
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
EN++ +EG S EKK K+ K +K
Sbjct: 34 ENDAAEEGASNGEKKKKKKKKSSK 57
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 24.6 bits (51), Expect = 8.3
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 367 HPTAESSTIEFCVSLHGMFRHHESNGAVPF*LMVNFVYWQVYFS-ERSI 224
+P+A S I F +S H + + ESN A ++ F+ +Y+S +RS+
Sbjct: 487 YPSA-SEVISFILSDHDLKKFWESNAAEYCLAILEFIERCIYYSADRSL 534
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 173 NLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKG 283
N VVS E+ NLF + L LP++K+ + G
Sbjct: 61 NSEIVVSTSEIKNLFYELTGLDPDTLPVNKLALRENG 97
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 194 EQELTNLFEKYGPLTEVNL 250
E+ T+L E+YGP+ +NL
Sbjct: 320 EKHFTSLIEEYGPVHIINL 338
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 8.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 383 AKSEKLENESDDEGLSFKEKKAKRLK 460
A S ENE DD+ + EK RLK
Sbjct: 118 ASSISEENEDDDQSSAIPEKDMDRLK 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,001
Number of Sequences: 5004
Number of extensions: 26813
Number of successful extensions: 127
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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