Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M10
(496 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 100 6e-22
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 56 1e-08
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 54 6e-08
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 49 2e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 47 1e-05
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 46 1e-05
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 46 1e-05
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 46 2e-05
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 7e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 44 9e-05
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 42 2e-04
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 39 0.003
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 38 0.003
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.005
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 36 0.024
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 36 0.024
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 35 0.032
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.032
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.032
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.032
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 35 0.042
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 34 0.074
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.074
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 33 0.098
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 33 0.13
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.17
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 33 0.17
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 32 0.23
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 32 0.23
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_39765| Best HMM Match : Chlam_OMP6 (HMM E-Value=7.3) 32 0.30
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.91
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 29 1.6
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 29 2.1
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 29 2.8
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007) 29 2.8
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3) 28 4.9
SB_43301| Best HMM Match : Rho_N (HMM E-Value=0.0007) 28 4.9
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 4.9
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_46848| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 6.4
SB_41355| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 6.4
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_17153| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 6.4
SB_31577| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 6.4
SB_5441| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_37988| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 8.5
SB_23283| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 8.5
SB_6| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 8.5
SB_42931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_7105| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 8.5
SB_6805| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 8.5
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 100 bits (240), Expect = 6e-22
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = +2
Query: 251 PIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLENESDDEGLS 430
PI + +++ G G VTF+MPEHAVKA+ ELDGT F GR+LH+LPAK++K E+ ++E +S
Sbjct: 273 PIGEHTNKTIGIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKEESNDNEESIS 332
Query: 431 FKEKKAKRLKAQAKSSHNWNVL 496
+K+K ++ K Q+ S HNWN L
Sbjct: 333 YKKKNEEKKKKQSGSDHNWNTL 354
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/102 (30%), Positives = 48/102 (47%)
Frame = +2
Query: 104 IKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKG 283
I + Q++ + FV N+ Y SE++L +F + GP+ L D+ + KG
Sbjct: 8 IAQAQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKG 67
Query: 284 YGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLENE 409
YG + E A+ A L+G GR L + A SEK + E
Sbjct: 68 YGFCEYKDQETALSAMRNLNGYELNGRALRVDSAASEKNKEE 109
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 54.0 bits (124), Expect = 6e-08
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVN-HQSKGYGTVTFMMPEHAVKAYTEL 340
FVRNL Y +++ E + FE+ GPL + DK N ++ +G+G VTF + E A+KA +
Sbjct: 23 FVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAKDNI 82
Query: 341 DGTAFCGRMLHL--LPAKSEKLENESDDEGLSFKEKKAKRLKAQAKSSH 481
+ GR +HL K+ E S KE + K ++ +H
Sbjct: 83 --KSIKGRPIHLDFSEKKARTKPGREGTENASQKETETKEVEVDHTETH 129
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+RNL++ +++ +TNLF+++G + + +D + SKG V + E + D
Sbjct: 419 FIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCLAATD 478
Query: 344 ----GTAFCGRMLH----LLPAKSEKLENESDDEGLSFKEKK 445
G G L + P K E++ + +E K+K+
Sbjct: 479 EDSEGLFLDGNRLQVDLAVTPGKLEQMSRQQKEERRDPKDKR 520
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 48.8 bits (111), Expect = 2e-06
Identities = 29/94 (30%), Positives = 47/94 (50%)
Frame = +2
Query: 107 KKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGY 286
KKRQE+ N +++NL + ++ L F YG ++ + D + SKG+
Sbjct: 200 KKRQERINRFQGVNL----YIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGN-SKGF 254
Query: 287 GTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAK 388
G V F PE A KA TE++G + L++ A+
Sbjct: 255 GFVCFSSPEEATKAVTEMNGRILISKPLYVALAQ 288
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/98 (22%), Positives = 49/98 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N + ++++ + + G + + + D +SKG+G V+F PE A +A L+
Sbjct: 112 YVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEG-KSKGFGFVSFETPEEAEEAVNVLN 170
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRL 457
G GR L +++K + + ++K+ +R+
Sbjct: 171 GKEIGGR--RLWAGRAKKRAERAAEVKAEIEKKRQERI 206
Score = 34.3 bits (75), Expect = 0.056
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEH--AVKAYTE 337
+V +LA V+E L F G + + + D V +S GY V F P H A++A
Sbjct: 16 YVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEAIAR 75
Query: 338 LDG 346
+DG
Sbjct: 76 VDG 78
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V +L + ++E + +FE +G + V L D ++SKGYG V F E A +A +++
Sbjct: 245 YVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMN 304
Query: 344 GTAFCGRMLHLLP 382
G GR L + P
Sbjct: 305 GFELAGRPLKIGP 317
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V +L V++ + +F YG + V+LP D+ N+ S+G+ V ++ PE KA +D
Sbjct: 1160 YVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMD 1219
Query: 344 GTAFCGR 364
G G+
Sbjct: 1220 GGQIDGQ 1226
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F +L V+++ LT F KY + + DK +++SKGYG V+F P +KA E++
Sbjct: 220 FCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREMN 279
Query: 344 GTAFCGRMLHLL 379
+F + HLL
Sbjct: 280 VLSFADQ--HLL 289
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V NL+ E +L LF GP++ + L DK +QSKG+ + F+ E A +A L G
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
Query: 347 TAFCGRMLHLLPAK 388
+ +L++ AK
Sbjct: 245 FGYDHLILNVEWAK 258
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V NL Y + ++L +F+KYG L ++ +P D+ H+S+G+ V F A A +D
Sbjct: 20 VDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDA 79
Query: 347 T 349
T
Sbjct: 80 T 80
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ NL + V+E +L + F +Y + +V + D+ + +G+ VTF ++ A ELD
Sbjct: 233 YIGNLDFKVNEADLQDRFSRYD-VVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELD 291
Query: 344 GTAFCGRMLHLLPAKSEK 397
G F GR + + A+S +
Sbjct: 292 GQEFDGRSMKVNQARSRE 309
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 176 LAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAF 355
L +V SE ++ L L V + D+ + +G+G VTF + KA + DG
Sbjct: 16 LCFVESEADVLFLRNGSKFLLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDL 75
Query: 356 CGRMLHLLPAK 388
GR + + A+
Sbjct: 76 DGRPMKVNKAQ 86
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.0 bits (99), Expect = 7e-05
Identities = 18/67 (26%), Positives = 38/67 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V ++ + + E+ + F +GP+ +++L D +N + KG+ V + +PE A A +++
Sbjct: 105 YVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMN 164
Query: 344 GTAFCGR 364
G GR
Sbjct: 165 GVLLGGR 171
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +2
Query: 194 EQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLH 373
E ++ ++FE +G + +L + + + KGYG + + + A A ++ G+ L
Sbjct: 212 EDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQFLR 271
Query: 374 L 376
+
Sbjct: 272 V 272
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 43.6 bits (98), Expect = 9e-05
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V LA V E+ L F +G +T+V +P+D + +G+G V F E A ++
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 344 GTAFCGRMLHLLPAKSEKLE 403
+ GR + + AK K++
Sbjct: 68 ESELFGRTIRVNLAKPMKIK 87
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 43.6 bits (98), Expect = 9e-05
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +2
Query: 98 LNIKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQS 277
LN K ++T FV NL + +E + +L YG + + L +V S
Sbjct: 94 LNTCKYHDKTLNVSPAPPESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDS 153
Query: 278 KGYGTVTFMMPEHAVKAYTELDGTA---FCGRMLHLLPAKSEKL 400
KGYG V + E+A++A +L TA GR+L + A+S L
Sbjct: 154 KGYGFVEYATRENAMQAKQQLLNTASKYIGGRILRVAFAESNLL 197
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ NL+Y V EQ L F + +V + D+ + +G+G VTF E KA E D
Sbjct: 8 YIGNLSYSVDEQALEEKFHGCD-VVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 344 GTAFCGRMLHLLPAK 388
G F GR + + A+
Sbjct: 67 GQDFDGRPMKVNQAQ 81
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL Y ++ +L +FE+YG + +V + DK +S+G + F+ + A A ++
Sbjct: 13 YVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAVN 72
Query: 344 GTAFCGRMLHLLPAK 388
GR + AK
Sbjct: 73 KKQMFGRTIKCTIAK 87
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
++R L ++ +L L KYG + +DK + KGYG V F P A KA L
Sbjct: 103 YIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAAL 161
Score = 29.5 bits (63), Expect = 1.6
Identities = 30/101 (29%), Positives = 45/101 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+++NL E L N+F KYG + + DK + SKG G F E A K +
Sbjct: 182 YIQNLPQNCDEAMLENMFSKYGKVISTRILRDK-DTNSKGVG---FARMESAEKCEQVIK 237
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLKAQ 466
F +M LP ++L + D G ++ +AKR Q
Sbjct: 238 D--FNKKM---LPGCIQELVVKFADGGPKKRQGQAKRYTKQ 273
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +2
Query: 104 IKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKG 283
++ RQE TN FV L + + L FE YG LT+V + D +S+G
Sbjct: 1 MENRQENTNNDPRAKL----FVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRG 56
Query: 284 YGTVTF 301
+G VTF
Sbjct: 57 FGYVTF 62
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/71 (35%), Positives = 34/71 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL Y V+ Q+L + F+ G + + D +SKG GTV F P A+ A L
Sbjct: 188 FVTNLDYKVNWQKLKDTFKCAGHVIRAEIMEDD-EKKSKGMGTVQFETPMEAMNAVNLLH 246
Query: 344 GTAFCGRMLHL 376
G R L +
Sbjct: 247 GKMLMDRALRV 257
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA 319
+V L VSE + LF + GP+ V++P D++ +GYG V F+ E A
Sbjct: 16 YVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDA 67
>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F++NL+ V E++L LF ++ L + + KG VTF E A+KA++ ++
Sbjct: 117 FLKNLSNKVKEEDLIRLFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLVN 176
Query: 344 GTAFCGRMLHL-LPAKSEKLENESDDEG 424
G GR + + K EK + + G
Sbjct: 177 GYRLKGRPVIIEFGRKREKAQQRDSEAG 204
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 37.1 bits (82), Expect = 0.008
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ NL++ E+ L FE+ G + +S+G+G F E KA EL+
Sbjct: 183 FLGNLSFDADEETLAAFFEEKG--LSATCRVITQEGRSRGFGYADFTSKEDYNKA-LELN 239
Query: 344 GTAFCGRMLHLLPAKSE 394
G CGR + + PA S+
Sbjct: 240 GEDCCGREIRINPANSK 256
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 35.9 bits (79), Expect = 0.018
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYG-PLTEVNLPIDKVNH-------QSKGYGTVTFMMPEHA 319
+ NL + +++ EL +FE +T+V + + N +S+G+G VTF PE A
Sbjct: 53 YAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPEDA 112
Query: 320 VKAYTELDGTAFCGRMLHLLPAKS 391
A L+G GR L + P+ S
Sbjct: 113 QTAVKSLNGKEVQGRTLKIAPSIS 136
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 35.5 bits (78), Expect = 0.024
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L+Y +++ L F KYG L V++ +D + + +G+ V F
Sbjct: 32 FVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQF 77
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 35.5 bits (78), Expect = 0.024
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 194 EQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRML 370
E E+ FE++G + + L K + +SKGY V F E A A + GR+L
Sbjct: 111 ENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGRLL 169
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 239 EVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRML 370
EV + D ++SKG+G V+F+ E A KA E+D G+ +
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQV 584
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + + E EL +FE GP+ EV L +D N Q++GY V + + A + L+
Sbjct: 77 FVGKIPRDLYEDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSKDDAKRCVKTLN 135
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 35.1 bits (77), Expect = 0.032
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++RNL+ ++E++L + +YG +D+V + K Y V F +HA+KA E D
Sbjct: 332 YLRNLSPSITEEKLKEEYSQYG-------AVDRVK-KLKDYAFVHFTERDHALKAIEETD 383
Query: 344 GTAFCGRMLHLLPAKSE 394
G G + AK +
Sbjct: 384 GKEMDGLKIEASLAKPQ 400
Score = 33.9 bits (74), Expect = 0.074
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 194 EQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
E EL +FE+ G + + L ID ++ +KG+ TF + A A +LD
Sbjct: 165 EDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLD 214
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEK 397
GPL V +P DK Q + +G V F P A LDG R +++ P + +
Sbjct: 481 GPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAINVKPQSNNQ 537
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV N+ E ++ LF YG + +++ +D+ KGY V + + A A L+
Sbjct: 296 FVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALN 355
Query: 344 GTAFCGR 364
G G+
Sbjct: 356 GAEMLGQ 362
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 34.7 bits (76), Expect = 0.042
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA 319
FV + Y + L F ++G + E + D+V +SKGYG VT + A
Sbjct: 13 FVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAA 64
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 33.9 bits (74), Expect = 0.074
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA 319
FV+ +E EL FE+YG + E + DK + SKGY +TF E A
Sbjct: 11 FVKGFNRETTESELRAFFEEYGVVKESKIVRDK-HGVSKGYAFITFESQEVA 61
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.9 bits (74), Expect = 0.074
Identities = 29/86 (33%), Positives = 36/86 (41%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L + L LF YG +T + L +D KGYG V E A A L+
Sbjct: 275 FVYGLPQEATPLFLYKLFSPYGAITNIELKLD------KGYGFVNMSNYEEACHAICCLN 328
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDE 421
GT G+ P+K K N S E
Sbjct: 329 GTPQHGKYSR-FPSKHLKTTNLSKFE 353
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 33.5 bits (73), Expect = 0.098
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 242 VNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAK 388
VN+ D+ + +G+G VTF E KA E DG GR + + AK
Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAK 173
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 197 QELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
+++ + FE+YG + +V + DK +++G V F+ A A E+DG
Sbjct: 37 EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDG 86
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 32.7 bits (71), Expect = 0.17
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ N+ S++E+ FE +GPL +V V G+ F A A ELD
Sbjct: 5 YIGNIGDNASKREIEREFETFGPLRDV-----WVARNPPGFAFCVFEDRRDAEDAVRELD 59
Query: 344 GTAFCGRMLHLLPAK 388
G CG+ + AK
Sbjct: 60 GRYICGQRARVELAK 74
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMP 310
FV NL+ E ++ F YG + +V++ D+ +SKG G V P
Sbjct: 322 FVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRHP 370
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPE 313
S + L FEK+G L E + D V +S+G+G +TF P+
Sbjct: 120 SAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPK 160
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 32.3 bits (70), Expect = 0.23
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL EL FEK+G L++V V G+ V + A +A ELD
Sbjct: 7 YVGNLGRNADSSELERAFEKFGRLSKV-----WVARNPPGFAFVEYEDYRDAEEAVRELD 61
Query: 344 GTAFCGRMLHL 376
G C R + +
Sbjct: 62 GANVCDRTIRV 72
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 32.3 bits (70), Expect = 0.23
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+VRN+ +SE +L +F KYG + +V + + YG V F E AV+A ++
Sbjct: 5 YVRNVPLPMSETQLKAVFTKYGQIEKV--------RKIRDYGFVYFAKRESAVQAIDGIN 56
Query: 344 GTAFCGRMLHL 376
G G L +
Sbjct: 57 GAYIDGCKLEV 67
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 32.3 bits (70), Expect = 0.23
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ +L S++E+ N F YGPL +V V G+ F A A ELD
Sbjct: 35 YIGSLGDNASKREIENEFGYYGPLKDV-----WVARNPPGFAFCIFDDRRDAEDAVRELD 89
Query: 344 GTAFCGRMLHLLPAK 388
G CG+ + + AK
Sbjct: 90 GRYICGQRVRVELAK 104
>SB_39765| Best HMM Match : Chlam_OMP6 (HMM E-Value=7.3)
Length = 198
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 236 TEVNLPIDKVNHQ-SKGYGTVTFMMPEHAVKAYTELDG-TAFCGRMLHL 376
T V + K +H+ S+ G +T MP+ A+ ELD T C LHL
Sbjct: 81 TRVGQCLQKYHHRDSRDSGVITLKMPQKAITCTVELDAYTVTCPGTLHL 129
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 31.1 bits (67), Expect = 0.52
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL E+E+ +F+KYG + EV + ++ KG+G + HA A LD
Sbjct: 56 FVGNLIDC-DEEEMKEMFKKYGEVAEVFI------NKEKGFGFIRLDTRLHAEAAKAGLD 108
Query: 344 GTAFCGRMLHL 376
GR L +
Sbjct: 109 MATRKGRTLRV 119
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.3 bits (65), Expect = 0.91
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKG 283
FV N+ + V +EL + F +G + + +D+V +SKG
Sbjct: 82 FVGNIGFKVRARELKDFFGYFGDVVYAQIIMDRVKKRSKG 121
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
++R+ + + L ++F YG + ++++ I +SKG+G VT+ E A +A
Sbjct: 66 YIRDFRPDIRKSSLESVFGPYGAIEDLSI-IRTQTGKSKGFGYVTYENAESAQRA 119
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 224 YGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLE 403
YG + VNL DK + KG+ + + + A +G GR + + + +
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDHCSNYRRP 61
Query: 404 --NESDDEG 424
+E DDEG
Sbjct: 62 KGDEKDDEG 70
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
V L+ +E++L +FEKYGP+ + + D HQ+K
Sbjct: 185 VFGLSLYTTERDLRPVFEKYGPVEAIQIVYD---HQAK 219
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 185 VVSEQELTNLFEKYGPLTEVNLPI--DKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFC 358
V+++ E+ ++ + G V P + +N + +G+G VTF A KA +L+GT
Sbjct: 93 VIADVEI--IYNERGSKHAVRFPTRPNPLNLRIEGFGFVTFNTAAEANKAREKLNGTIVD 150
Query: 359 GRMLHL 376
GR + +
Sbjct: 151 GRKVEV 156
>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1133
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPTRSSHVQSLKHFANRAANSIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL +A+
Sbjct: 136 AKEAVDKRVKRLKERIKRLHEEAE 159
>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
Length = 471
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 386 KSEKLENESDDEGLSFKEKKAKRLKAQAKS 475
K + E+ D+E L KEKK KR K++ S
Sbjct: 283 KKKSCEDSEDEEHLPSKEKKKKRKKSKDSS 312
>SB_43301| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 393
Score = 27.9 bits (59), Expect = 4.9
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANLIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL +A+
Sbjct: 136 VKEAADKRVERLKERIKRLHEEAE 159
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 27.9 bits (59), Expect = 4.9
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Frame = +2
Query: 203 LTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF---MMPEHAVKAYTELDGTAFCGRMLH 373
L +F ++G + V+LP K N + KG+ + F EH V+ + T +
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFNRESKTKKEEKREP 163
Query: 374 LLPAKSE-----KLENESDDEG--LSFKEKKAKRLKAQAKSSHNWN 490
+ K++ + +ESD E LS + + KR + +++S + N
Sbjct: 164 SIDDKTKIKKRRRSHSESDLESSKLSLSQSERKRRRTTSETSVDSN 209
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ LA+ +E++L F YG + EV K ++ +G + M + + +
Sbjct: 205 FIGGLAFGTTEEDLKEYFSTYG-MVEVK----KAEYRERGQQSKDHQMGGNPLATPLHMG 259
Query: 344 GTAFCGRMLHLLP 382
G + G+ +H P
Sbjct: 260 GGQYGGQYMHQAP 272
>SB_46848| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 173
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANSIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 AKEAADKRVKRLKERIKRLHEEVE 159
>SB_41355| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 992
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANSIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 AKEAADKRVKRLKERIKRLHEEVE 159
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 188 VSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRM 367
+++Q +FE L + K + S G+G V + E A KA +L+G ++
Sbjct: 58 MTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKV 117
Query: 368 L 370
L
Sbjct: 118 L 118
>SB_17153| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 393
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANLIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 VKEAADKRVELLKERIKRLHEEVE 159
>SB_31577| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 871
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANLIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 VKEAADKRVELLKERIKRLHEEVE 159
>SB_5441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFM--MPEHAVKAYTELDGTAFCGR 364
++Q+L ++ E+YG + +N+P D+ + QS Y + PE KA + DG C
Sbjct: 36 AQQDLLSMMERYGLIARLNVP-DENSQQSVQYFVPAQLTSSPESLTKACPK-DGDP-CPL 92
Query: 365 MLH 373
++H
Sbjct: 93 LIH 95
>SB_37988| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1018
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANSIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 VKEAADKRVERLKERIKRLHEEVE 159
>SB_23283| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1128
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANSIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 VKEAADKRVERLKERIKRLHEEVE 159
>SB_6| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 486
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANSIKSELD--KFADWILSYVPEPVKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 VKEAADKRVKRLKERIKRLHEEVE 159
>SB_42931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 49 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANSIKSELD--KFADWILSYVPEPVKKT 106
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 107 VKEAADKRVKRLKERIKRLHEEVE 130
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 182 YVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKG 283
++ +E EL F +GP+ +V + D+ +KG
Sbjct: 1075 FLTTELELETFFSNFGPVADVRIVCDRRTGLNKG 1108
>SB_7105| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 173
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANSIKSELD--KFADWILSYVPEPIKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 VKEAADKRVERLKERIKRLHEEVE 159
>SB_6805| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 211
Score = 27.1 bits (57), Expect = 8.5
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 GPLTEVNLPIDKVNH--QSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL 400
GP+ E+N+PI K + +S ++ A +ELD F +L +P +K
Sbjct: 78 GPIPEINVPILKPSQPPRSSRVQSLKHFANRAANSIKSELD--KFADWILSYVPEPVKKT 135
Query: 401 ENESDDEGLSFKEKKAKRLKAQAK 472
E+ D+ + +++ KRL + +
Sbjct: 136 VKEAADKRVERLKERIKRLHEEVE 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,679,932
Number of Sequences: 59808
Number of extensions: 192214
Number of successful extensions: 576
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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