Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M10
(496 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 89 1e-18
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 60 1e-09
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 58 3e-09
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 54 6e-08
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 54 6e-08
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 54 6e-08
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 53 1e-07
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 49 2e-06
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 49 2e-06
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 46 2e-05
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 45 3e-05
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 44 8e-05
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 43 1e-04
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 43 1e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 42 3e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 42 3e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 42 3e-04
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 41 4e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 41 4e-04
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 41 4e-04
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 40 7e-04
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 40 0.001
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 40 0.001
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 40 0.001
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 40 0.001
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 40 0.001
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 40 0.001
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 40 0.001
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 40 0.001
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 40 0.001
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 39 0.002
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 39 0.002
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 39 0.002
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 39 0.002
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 37 0.009
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 37 0.009
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 37 0.009
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 37 0.009
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 37 0.009
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 37 0.009
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 37 0.009
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 36 0.012
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 36 0.012
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 36 0.012
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 35 0.028
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 35 0.028
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 35 0.028
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 35 0.028
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 35 0.028
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 35 0.037
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 35 0.037
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 35 0.037
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 34 0.065
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 33 0.086
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 31 0.61
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 30 1.1
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF038605-5|AAB92019.1| 211|Caenorhabditis elegans Hypothetical ... 28 3.2
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 28 4.3
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 27 7.5
AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical ... 27 7.5
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 27 7.5
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 27 7.5
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 9.9
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 9.9
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 89.4 bits (212), Expect = 1e-18
Identities = 46/103 (44%), Positives = 61/103 (59%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+RNL Y E +L LF+KYG ++EV + IDK KG+ V F+ PE AV AY+ LD
Sbjct: 282 FLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALD 341
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLKAQAK 472
G F GRM+H+LP EK E ++E + LKA+AK
Sbjct: 342 GYVFKGRMMHILPG-DEKRTKEGEEESEVVPDDPDNPLKAEAK 383
Score = 45.6 bits (103), Expect = 2e-05
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDK-VNHQSKGYGTVTFMMPEHAVKAYTEL- 340
VRNL + S +E+ LFE +G + + +P Q +G+G V F+ + A +A+ L
Sbjct: 752 VRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEAHRAFDSLV 811
Query: 341 DGTAFCGRMLHLLPAK-SEKLE--NESDDEGLSFKEKKAKRLKAQAK 472
T GR L L AK E +E E E + +K K+ KAQ +
Sbjct: 812 HSTHLYGRRLVLEWAKDDETVEELREKTAEKFAGNKKGVKKSKAQTE 858
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V+NL +EQ+L FEKYG +++ +L K + +G+ V F+ A A + +
Sbjct: 7 VKNLPSTCTEQQLRKFFEKYGQISDASLKYTK-EGKFRGFAFVGFLDEGSASNALAKSNQ 65
Query: 347 TAFCGRML 370
T F + L
Sbjct: 66 TFFNSKKL 73
Score = 34.7 bits (76), Expect = 0.037
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Frame = +2
Query: 107 KKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEK-YGPLT-------EVNLPIDK 262
KK+ + FV+NLA+ ++ L LF K YG L ++N P +
Sbjct: 625 KKKSSKKQSEKEIESGSTLFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLN-PAEP 683
Query: 263 VNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLENESDDEGLSFKEK 442
S G+G V F A A ++ G G H L K EN +D L KE
Sbjct: 684 TKPLSMGFGFVQFYTAFDAKTALKDMQGELLDG---HSLELKISHREN-ADKGALKRKEV 739
Query: 443 KAK 451
K K
Sbjct: 740 KQK 742
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 170 RNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFM-MPEHAVKAYTELDG 346
+NL V +EL +FEK+G T+V +P + G + M P A KA+ L
Sbjct: 488 KNLPAGVESEELQRMFEKFGDCTKVLMPTE------GGVSALVIMGNPVDAKKAFRALAY 541
Query: 347 TAFCGRMLHL 376
+ F + L+L
Sbjct: 542 SRFRSQPLYL 551
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/103 (30%), Positives = 54/103 (52%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
+ NL+Y + +L FE+YG + +V++P DK + QSKG+G V F A A DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 347 TAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLKAQAKS 475
GR L + AK ++ +E G ++++ + +++S
Sbjct: 83 KLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRS 125
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/86 (34%), Positives = 45/86 (52%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
+ NL+Y + +L FE+YG + +V++P DK + QSKG+G V F A A DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 347 TAFCGRMLHLLPAKSEKLENESDDEG 424
GR L + AK ++ +E G
Sbjct: 83 KLVDGRELRVTLAKYDRPSDERGGRG 108
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 54.0 bits (124), Expect = 6e-08
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 104 IKKRQEQTNXXXXXXXXXXX-FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
+KK+ EQ +V+NL V + L FE YG +T + D+ N +SK
Sbjct: 239 LKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSK 297
Query: 281 GYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEK 397
G+G V F PE A A TE++ C + L++ A+ ++
Sbjct: 298 GFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 336
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/99 (27%), Positives = 47/99 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N +++ L LF K+G +T + V +SKG+G V F PE A A L
Sbjct: 156 YVKNFGDHYNKETLEKLFAKFGNITSCE--VMTVEGKSKGFGFVAFANPEEAETAVQALH 213
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
+ G L L +++K + ++ KA+R++
Sbjct: 214 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQ 252
Score = 33.9 bits (74), Expect = 0.065
Identities = 21/88 (23%), Positives = 34/88 (38%)
Frame = +2
Query: 116 QEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTV 295
Q N +V +L V+E L F GP+ + + D S GY V
Sbjct: 19 QPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYV 78
Query: 296 TFMMPEHAVKAYTELDGTAFCGRMLHLL 379
F P A +A ++ A G+ + ++
Sbjct: 79 NFQQPADAERAMDTMNFEALHGKPMRIM 106
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 54.0 bits (124), Expect = 6e-08
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 104 IKKRQEQTNXXXXXXXXXXX-FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
+KK+ EQ +V+NL V + L FE YG +T + D+ N +SK
Sbjct: 236 LKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSK 294
Query: 281 GYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEK 397
G+G V F PE A A TE++ C + L++ A+ ++
Sbjct: 295 GFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 333
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/99 (27%), Positives = 47/99 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N +++ L LF K+G +T + V +SKG+G V F PE A A L
Sbjct: 153 YVKNFGDHYNKETLEKLFAKFGNITSCE--VMTVEGKSKGFGFVAFANPEEAETAVQALH 210
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
+ G L L +++K + ++ KA+R++
Sbjct: 211 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQ 249
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 54.0 bits (124), Expect = 6e-08
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 104 IKKRQEQTNXXXXXXXXXXX-FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
+KK+ EQ +V+NL V + L FE YG +T + D+ N +SK
Sbjct: 299 LKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSK 357
Query: 281 GYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEK 397
G+G V F PE A A TE++ C + L++ A+ ++
Sbjct: 358 GFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 396
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/99 (27%), Positives = 47/99 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N +++ L LF K+G +T + V +SKG+G V F PE A A L
Sbjct: 216 YVKNFGDHYNKETLEKLFAKFGNITSCE--VMTVEGKSKGFGFVAFANPEEAETAVQALH 273
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
+ G L L +++K + ++ KA+R++
Sbjct: 274 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQ 312
Score = 33.9 bits (74), Expect = 0.065
Identities = 21/88 (23%), Positives = 34/88 (38%)
Frame = +2
Query: 116 QEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTV 295
Q N +V +L V+E L F GP+ + + D S GY V
Sbjct: 19 QPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYV 78
Query: 296 TFMMPEHAVKAYTELDGTAFCGRMLHLL 379
F P A +A ++ A G+ + ++
Sbjct: 79 NFQQPADAERAMDTMNFEALHGKPMRIM 106
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +2
Query: 104 IKKRQEQTNXXXXXXXXXXX-FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
+KK+ EQ +V+NL V + L FE YG +T + D+ N +SK
Sbjct: 299 LKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSK 357
Query: 281 GYGTVTFMMPEHAVKAYTELDGTAFCGRMLHL 376
G+G V F PE A A TE++ C + L++
Sbjct: 358 GFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Score = 41.1 bits (92), Expect = 4e-04
Identities = 26/99 (26%), Positives = 47/99 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N +++ L +F K+G +T + V +SKG+G V F PE A A L
Sbjct: 216 YVKNFGDHYNKETLEKVFAKFGNITSCE--VMTVEGKSKGFGFVAFANPEEAETAVQALH 273
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
+ G L L +++K + ++ KA+R++
Sbjct: 274 DSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQ 312
Score = 33.9 bits (74), Expect = 0.065
Identities = 21/88 (23%), Positives = 34/88 (38%)
Frame = +2
Query: 116 QEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTV 295
Q N +V +L V+E L F GP+ + + D S GY V
Sbjct: 19 QPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYV 78
Query: 296 TFMMPEHAVKAYTELDGTAFCGRMLHLL 379
F P A +A ++ A G+ + ++
Sbjct: 79 NFQQPADAERAMDTMNFEALHGKPMRIM 106
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V N+ + E +LT +FEK GP+ +V + ++ SKG+G VT P+ A +A E +G
Sbjct: 104 VSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNG 161
Query: 347 TAFCGRMLHL 376
T GR + +
Sbjct: 162 TTIEGRRVEV 171
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V N+ + E +LT +FEK GP+ +V + ++ SKG+G VT P+ A +A E +G
Sbjct: 104 VSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNG 161
Query: 347 TAFCGRMLHL 376
T GR + +
Sbjct: 162 TTIEGRRVEV 171
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ L+Y +SE ++ +F +YG + +NL DK +SKG+ + + + A +
Sbjct: 41 YIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFN 100
Query: 344 GTAFCGRML---HLLPAKSEKLENESDDE 421
G + RM+ H+ K K + ++DDE
Sbjct: 101 GISLHKRMIRVDHVEEYKVPKYKEDADDE 129
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKV-NHQSKGYGTVTFMMPEHAVKAYTELD 343
++NL+ V + L +F YG + V+LP D+ NH +GYG V + E A K+ +D
Sbjct: 137 IKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMD 196
Query: 344 GTAFCGRMLHL 376
G G +H+
Sbjct: 197 GGQIDGMAVHV 207
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV N++Y VSE + ++F K G + + + D+ + KGYG + F + A A L+
Sbjct: 21 FVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLN 80
Query: 344 GTAFCGRMLHL 376
G GR+L +
Sbjct: 81 GYELSGRILRV 91
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/78 (26%), Positives = 44/78 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N+ +++ L + F +G +T + +D+ N +SKG+G V F PE A A T+++
Sbjct: 346 YVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAVTDMN 404
Query: 344 GTAFCGRMLHLLPAKSEK 397
+ L++ A+ ++
Sbjct: 405 SKMIGAKPLYVALAQRKE 422
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/99 (23%), Positives = 49/99 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV+N + +++L+ +F K+G +T + D + KG+G V F + A +A +L+
Sbjct: 241 FVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
+ G L +++K S + ++ K +R++
Sbjct: 300 DSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQ 338
Score = 33.9 bits (74), Expect = 0.065
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ +L VSE L F GP+ + + D + S GY V F P A +A ++
Sbjct: 60 YIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
Query: 344 GTAFCGRMLHLL 379
GR + ++
Sbjct: 120 FEVIHGRPMRIM 131
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 43.6 bits (98), Expect = 8e-05
Identities = 21/78 (26%), Positives = 44/78 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N+ +++ L + F +G +T + +D+ N +SKG+G V F PE A A T+++
Sbjct: 346 YVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAVTDMN 404
Query: 344 GTAFCGRMLHLLPAKSEK 397
+ L++ A+ ++
Sbjct: 405 SKMIGAKPLYVALAQRKE 422
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/99 (23%), Positives = 49/99 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV+N + +++L+ +F K+G +T + D + KG+G V F + A +A +L+
Sbjct: 241 FVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
+ G L +++K S + ++ K +R++
Sbjct: 300 DSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQ 338
Score = 33.9 bits (74), Expect = 0.065
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ +L VSE L F GP+ + + D + S GY V F P A +A ++
Sbjct: 60 YIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMN 119
Query: 344 GTAFCGRMLHLL 379
GR + ++
Sbjct: 120 FEVIHGRPMRIM 131
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/70 (31%), Positives = 40/70 (57%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V N+ + + +L +FEK+G +++V + ++ SKG+G VT P+ A +A EL G
Sbjct: 157 VSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQDAERARQELHG 214
Query: 347 TAFCGRMLHL 376
+ GR + +
Sbjct: 215 SMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/70 (31%), Positives = 40/70 (57%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V N+ + + +L +FEK+G +++V + ++ SKG+G VT P+ A +A EL G
Sbjct: 157 VSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQDAERARQELHG 214
Query: 347 TAFCGRMLHL 376
+ GR + +
Sbjct: 215 SMIEGRKIEV 224
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N + +E+EL N F G + V + D+ + +G+ + F A +A +++
Sbjct: 8 YVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMN 67
Query: 344 GTAFCGRMLHL 376
G F GR L +
Sbjct: 68 GAEFNGRPLRV 78
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/88 (22%), Positives = 39/88 (44%)
Frame = +2
Query: 107 KKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGY 286
+ +Q Q +V ++++ + E L F+ +GP+ +N+ D K +
Sbjct: 86 ENQQRQQMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTF 145
Query: 287 GTVTFMMPEHAVKAYTELDGTAFCGRML 370
V + +PE A+ A ++G GR L
Sbjct: 146 AFVEYEVPEAALLAQESMNGQMLGGRNL 173
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/88 (22%), Positives = 39/88 (44%)
Frame = +2
Query: 107 KKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGY 286
+ +Q Q +V ++++ + E L F+ +GP+ +N+ D K +
Sbjct: 86 ENQQRQQMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTF 145
Query: 287 GTVTFMMPEHAVKAYTELDGTAFCGRML 370
V + +PE A+ A ++G GR L
Sbjct: 146 AFVEYEVPEAALLAQESMNGQMLGGRNL 173
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/88 (22%), Positives = 39/88 (44%)
Frame = +2
Query: 107 KKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGY 286
+ +Q Q +V ++++ + E L F+ +GP+ +N+ D K +
Sbjct: 86 ENQQRQQMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTF 145
Query: 287 GTVTFMMPEHAVKAYTELDGTAFCGRML 370
V + +PE A+ A ++G GR L
Sbjct: 146 AFVEYEVPEAALLAQESMNGQMLGGRNL 173
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V NL ++E EL +LF K G + + + DKV KG+ VTF + A +A EL+
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 347 TAFCGRMLHLL 379
RM H++
Sbjct: 240 I----RMYHMV 246
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 41.1 bits (92), Expect = 4e-04
Identities = 22/67 (32%), Positives = 37/67 (55%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV +L + +L F K+G ++E + D ++ KGYG V++ E A +A E++
Sbjct: 135 FVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMN 194
Query: 344 GTAFCGR 364
G A+ GR
Sbjct: 195 G-AWLGR 200
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 41.1 bits (92), Expect = 4e-04
Identities = 30/94 (31%), Positives = 43/94 (45%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F +L VS++ L F KY + + + ++SKGYG V+F E V+A E+D
Sbjct: 206 FCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMD 265
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKK 445
G R + L KS E D K+KK
Sbjct: 266 GKYVGNRPIKL--RKSAWKERNIDVIKQKRKQKK 297
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +2
Query: 212 LFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHL 376
+FEK GP+ +V + ++ SKG+G VT P+ A +A E +GT GR + +
Sbjct: 1 MFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 53
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV +L+ VS + L + F K+G ++E + D +SKGYG V+F ++A A ++
Sbjct: 138 FVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMN 197
Query: 344 G 346
G
Sbjct: 198 G 198
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V L VSE L L + GP+ VN+P D+V +G+G V FM E A A L+
Sbjct: 16 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75
Query: 344 GTAFCGRMLHLLPAKSEK 397
G+ + + A + +
Sbjct: 76 MIKLYGKPIKVNKASAHE 93
Score = 30.3 bits (65), Expect = 0.80
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEV-NLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV NL V E+ L + F +G + +V + D + SKG+ + F E + A +
Sbjct: 103 FVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAM 162
Query: 341 DGTAFCGRML 370
+G C R +
Sbjct: 163 NGQFLCNRAI 172
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +2
Query: 188 VSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
++++E+ +LF G + L DKV QS GYG V ++ E A++A + +G
Sbjct: 53 MTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNG 105
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL+ + L LF ++G + V + D + Q KGY V+ A A L+
Sbjct: 377 FVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 344 GTAFCGRMLHLL 379
GT G+ L ++
Sbjct: 436 GTNLAGKTLQVV 447
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + +E + LFEKYG + N+ DK SKG VTF + A++A L
Sbjct: 58 FVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
Query: 344 GTAFCGRMLHLLPAKSEKLENESD 415
M H + K EN ++
Sbjct: 118 NIKVIEGMHHPVQMKPADTENRNE 141
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + +E + LFEKYG + N+ DK SKG VTF + A++A L
Sbjct: 58 FVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
Query: 344 GTAFCGRMLHLLPAKSEKLENESD 415
M H + K EN ++
Sbjct: 118 NIKVIEGMHHPVQMKPADTENRNE 141
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V L VSE L L + GP+ VN+P D+V +G+G V FM E A A L+
Sbjct: 26 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 85
Query: 344 GTAFCGRMLHLLPAKSEK 397
G+ + + A + +
Sbjct: 86 MIKLYGKPIKVNKASAHE 103
Score = 30.3 bits (65), Expect = 0.80
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEV-NLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV NL V E+ L + F +G + +V + D + SKG+ + F E + A +
Sbjct: 113 FVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAM 172
Query: 341 DGTAFCGRML 370
+G C R +
Sbjct: 173 NGQFLCNRAI 182
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + +E + LFEKYG + N+ DK SKG VTF + A++A L
Sbjct: 58 FVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
Query: 344 GTAFCGRMLHLLPAKSEKLENESD 415
M H + K EN ++
Sbjct: 118 NIKVIEGMHHPVQMKPADTENRNE 141
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + +E + LFEKYG + N+ DK SKG VTF + A++A L
Sbjct: 58 FVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
Query: 344 GTAFCGRMLHLLPAKSEKLENESD 415
M H + K EN ++
Sbjct: 118 NIKVIEGMHHPVQMKPADTENRNE 141
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + +E + LFEKYG + N+ DK SKG VTF + A++A L
Sbjct: 58 FVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
Query: 344 GTAFCGRMLHLLPAKSEKLENESD 415
M H + K EN ++
Sbjct: 118 NIKVIEGMHHPVQMKPADTENRNE 141
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + +E + LFEKYG + N+ DK SKG VTF + A++A L
Sbjct: 58 FVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
Query: 344 GTAFCGRMLHLLPAKSEKLENESD 415
M H + K EN ++
Sbjct: 118 NIKVIEGMHHPVQMKPADTENRNE 141
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV + +E + LFEKYG + N+ DK SKG VTF + A++A L
Sbjct: 58 FVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALH 117
Query: 344 GTAFCGRMLHLLPAKSEKLENESD 415
M H + K EN ++
Sbjct: 118 NIKVIEGMHHPVQMKPADTENRNE 141
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/78 (26%), Positives = 41/78 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV ++ V+ ++L++ F +YG + + + D+ N +S+G+ V F E A +
Sbjct: 32 FVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE 91
Query: 344 GTAFCGRMLHLLPAKSEK 397
T G+ + + PAKS +
Sbjct: 92 QT-IKGKSVEVKPAKSRE 108
Score = 36.7 bits (81), Expect = 0.009
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L SEQ+L + FE++G + ++ P DK + + + F E A KA ++
Sbjct: 113 FVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTK 172
Query: 344 GT 349
T
Sbjct: 173 QT 174
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/78 (26%), Positives = 41/78 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV ++ V+ ++L++ F +YG + + + D+ N +S+G+ V F E A +
Sbjct: 32 FVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE 91
Query: 344 GTAFCGRMLHLLPAKSEK 397
T G+ + + PAKS +
Sbjct: 92 QT-IKGKSVEVKPAKSRE 108
Score = 36.7 bits (81), Expect = 0.009
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L SEQ+L + FE++G + ++ P DK + + + F E A KA ++
Sbjct: 113 FVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTK 172
Query: 344 GT 349
T
Sbjct: 173 QT 174
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 38.7 bits (86), Expect = 0.002
Identities = 28/88 (31%), Positives = 45/88 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ NLA+ V +L +F G +T ++ IDK +SKG + + P AV+A + L+
Sbjct: 191 FIANLAFNVGTDKLYEVFGMAGKITWMDFRIDK-EGKSKGVCVIQYTHPIEAVQAVSMLN 249
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGL 427
G R L + + +K E E + GL
Sbjct: 250 GQRLFDRNLVVKMDRFDK-ELEHKEGGL 276
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V ++ V E L LFEK G + ++ L +D ++ S+GY VT+ E A A D
Sbjct: 203 YVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYD 262
Query: 344 G 346
G
Sbjct: 263 G 263
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/88 (25%), Positives = 35/88 (39%)
Frame = +2
Query: 113 RQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGT 292
R +Q + ++R L ++ L + KYG + +DK + KGYG
Sbjct: 67 RGDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGF 126
Query: 293 VTFMMPEHAVKAYTELDGTAFCGRMLHL 376
V F P+ A A L+ +M L
Sbjct: 127 VDFESPQAAAAAVDGLNTEGVQAQMAKL 154
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 36.7 bits (81), Expect = 0.009
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++R L ++ L + KYG + +DK + KGYG V F P+ A A L+
Sbjct: 110 YIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLN 169
Query: 344 GTAFCGRMLHL 376
+M L
Sbjct: 170 TEGVQAQMAKL 180
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
+E LT F KYG +T+ + +DK + +G+G VTF
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L ++ + + ++G +T++ + D +S+G+G VTF
Sbjct: 26 FVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 36.7 bits (81), Expect = 0.009
Identities = 19/75 (25%), Positives = 38/75 (50%)
Frame = +2
Query: 188 VSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRM 367
V+E+ L F +G + +++P+D + + +G+G V F M E A A ++ + G+
Sbjct: 22 VTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKT 81
Query: 368 LHLLPAKSEKLENES 412
+ + A+ K S
Sbjct: 82 IRVNFARPPKATERS 96
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
+E LT F KYG +T+ + +DK + +G+G VTF
Sbjct: 88 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 124
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 203 LTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
+ + ++G +T++ + D +S+G+G VTF
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 33
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
+E LT F KYG +T+ + +DK + +G+G VTF
Sbjct: 88 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 124
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 203 LTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
+ + ++G +T++ + D +S+G+G VTF
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 33
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
+E LT F KYG +T+ + +DK + +G+G VTF
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L ++ + + ++G +T++ + D +S+G+G VTF
Sbjct: 26 FVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.009
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
+E LT F KYG +T+ + +DK + +G+G VTF
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L ++ + + ++G +T++ + D +S+G+G VTF
Sbjct: 26 FVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ L+ + +++ FE YG + + L DK + +G+G VTF E A K E+
Sbjct: 137 FIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKV-CEIH 195
Query: 344 GTAFCGRMLHLLPAKSEKL 400
G+M+ A+ +++
Sbjct: 196 FHEINGKMVECKKAQPKEV 214
Score = 33.9 bits (74), Expect = 0.065
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYT--- 334
F+ L++ + + L + F ++G + E + D +++G+G +TF+ P K
Sbjct: 48 FIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNRE 107
Query: 335 -ELDG 346
ELDG
Sbjct: 108 HELDG 112
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVT 298
FV L Y S++ L FE++G + E + D+ +S+GYG VT
Sbjct: 38 FVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVT 82
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ L+ + +++ FE YG + + L DK + +G+G VTF E A K E+
Sbjct: 137 FIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKV-CEIH 195
Query: 344 GTAFCGRMLHLLPAKSEKL 400
G+M+ A+ +++
Sbjct: 196 FHEINGKMVECKKAQPKEV 214
Score = 33.9 bits (74), Expect = 0.065
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYT--- 334
F+ L++ + + L + F ++G + E + D +++G+G +TF+ P K
Sbjct: 48 FIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNRE 107
Query: 335 -ELDG 346
ELDG
Sbjct: 108 HELDG 112
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 35.1 bits (77), Expect = 0.028
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N+ + EQ+L +F YG + V + + + SKG+G VT E KA L
Sbjct: 54 YVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN--DRGSKGFGFVTLDSIESCEKARAALH 111
Query: 344 GTAFCGRMLHLLPA--KSEKLENESDDEGL 427
+ GR++ + A KL N +E L
Sbjct: 112 ESHVQGRIIEVRRATPTRRKLINNPQNEVL 141
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 35.1 bits (77), Expect = 0.028
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
F+ L++ ++++L N F ++GP+ + + D S+G+G VTF
Sbjct: 52 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 97
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 35.1 bits (77), Expect = 0.028
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
F+ L++ ++++L N F ++GP+ + + D S+G+G VTF
Sbjct: 72 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 117
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 35.1 bits (77), Expect = 0.028
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
F+ L++ ++++L N F ++GP+ + + D S+G+G VTF
Sbjct: 73 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 35.1 bits (77), Expect = 0.028
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N+ + EQ+L +F YG + V + + + SKG+G VT E KA L
Sbjct: 54 YVSNIPFSFREQDLAAMFFAYGRVLSVEIVTN--DRGSKGFGFVTLDSIESCEKARAALH 111
Query: 344 GTAFCGRMLHLLPA--KSEKLENESDDEGL 427
+ GR++ + A KL N +E L
Sbjct: 112 ESHVQGRIIEVRRATPTRRKLINNPQNEVL 141
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 34.7 bits (76), Expect = 0.037
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV N+ +E ++ + F +YG + ++L +D+ KGY V + + A +A + +
Sbjct: 58 FVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSN 117
Query: 344 GTAFCGR 364
T G+
Sbjct: 118 DTDLLGQ 124
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 34.7 bits (76), Expect = 0.037
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA--VKAYTE 337
FV +E EL FEK+ + +V + + ++ QSKGYG +TF + A ++ T
Sbjct: 69 FVGGFPTSTTETELREHFEKFFAVKDVKM-VKSLDGQSKGYGFITFETEDQAEEIRKLTP 127
Query: 338 LDGTAFCGRMLHLLPA 385
F R L+L PA
Sbjct: 128 KQ-LEFRSRKLNLGPA 142
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 34.7 bits (76), Expect = 0.037
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA--VKAYTE 337
FV +E EL FEK+ + +V + + ++ QSKGYG +TF + A ++ T
Sbjct: 70 FVGGFPTSTTETELREHFEKFFAVKDVKM-VKSLDGQSKGYGFITFETEDQAEEIRKLTP 128
Query: 338 LDGTAFCGRMLHLLPA 385
F R L+L PA
Sbjct: 129 KQ-LEFRSRKLNLGPA 143
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 33.9 bits (74), Expect = 0.065
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FVRN+ + ++ EL LF K+G +T V K + + KG V F A K D
Sbjct: 686 FVRNVHFQATDDELKALFSKFGTVTSVRRVTHK-DGKPKGIAFVDFDTEASAQKCVASGD 744
Query: 344 GTAFCGRMLHLL----PAKSEKLENESDDEGLSFKE 439
R L + P K +K + G S +E
Sbjct: 745 KLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEE 780
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 33.5 bits (73), Expect = 0.086
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
++ ++ +V + +L + F++YG + VN+ D +G+ ++TF + A KA
Sbjct: 28 YLTHVKWVTGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKA 82
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 30.7 bits (66), Expect = 0.61
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFE-KYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV NL + ++E L F + GP+ V + DK + KG+ V F
Sbjct: 249 FVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNF 295
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 206 TNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPA 385
T L++ +G +T+ + H + GYG V F +A K E+DG G+++ + A
Sbjct: 110 TELYQAFGGITDGVVQC----HVADGYGFVLFDTRANAQKKIVEMDGKTLNGKLISVSWA 165
Query: 386 KSE 394
+ +
Sbjct: 166 RPD 168
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ L S++++ + F YG L++V + G+G V F A A +L+
Sbjct: 5 YIGRLPNRASDRDVEHFFRGYGKLSDVIM--------KNGFGFVDFQDQRDADDAVHDLN 56
Query: 344 GTAFCG-RMLHLLPAKSEKLENESDDEGLSFKE 439
G CG R++ P + E G +E
Sbjct: 57 GKELCGERVILEFPRRKVGYNEERSGSGFRGRE 89
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 29.1 bits (62), Expect = 1.9
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL- 340
F+RNL+Y E+ + K+G + + K + SKG V F P A +
Sbjct: 266 FLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGVE 325
Query: 341 DGTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
DG R++ A K + + E L+ K + L+
Sbjct: 326 DGVIIDNRLVKANLAIPRKEAADMEKEKLTKVPKDKRNLR 365
>AF038605-5|AAB92019.1| 211|Caenorhabditis elegans Hypothetical
protein C02B10.4 protein.
Length = 211
Score = 28.3 bits (60), Expect = 3.2
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGP-LTEVNL-PIDKVNHQSKGYGTVTFMMPEHAVKAYTE- 337
++NLA V++++L LFE+Y P L +++ P + N G ++P HA A +
Sbjct: 97 IKNLATTVTQEDLEELFEQYEPELVQLHYGPTGESN------GCADLIVP-HAQVAIIQK 149
Query: 338 -LDGTAFCGRMLHLLPAKSEKLENESD--DEGLSFKEKKAKRLKAQAKS 475
L+G G + +L A K + D + + KAK ++ KS
Sbjct: 150 ALEGVLLDGEPIEVLEANPPKQVSVFDRIKKVSRGNDFKAKNMRVVVKS 198
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical protein
K10G4.5 protein.
Length = 1251
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +2
Query: 260 KVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLENESDDEGLSFKE 439
+V ++ KG T P ++ C M H+L EKL NE E + F +
Sbjct: 822 EVFYRDKGKDTWIMYEPYQPIRIKNRDCMDVLCDEMKHILEKNPEKL-NEFIVEQMGFDD 880
Query: 440 KKAKRLKAQAKSSHNWNVL 496
+ RL Q S N++
Sbjct: 881 EHLMRLHDQLVSISKVNLI 899
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/86 (22%), Positives = 39/86 (45%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+++NL Y ++ +E+ +F K+G + ++ + +++G V + A A L
Sbjct: 22 YIKNLPYKITTEEMYEIFGKFGAVRQIRV---GNTAETRGTAFVVYEDIFDAKTACEHLS 78
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDE 421
G R L +L ++ K D E
Sbjct: 79 GYNVSNRYLVVLYYQATKAWKRMDTE 104
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 260 KVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
KV H S Y VTF PE A KA +DG
Sbjct: 58 KVRHMSD-YAYVTFETPEDAQKAINLVDG 85
>AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical
protein H06I04.3b protein.
Length = 716
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 392 EKLENESDDEGLSFKEKKAKRLKAQAK 472
E + S+DE + K+KK K LKA+A+
Sbjct: 359 ELIAKASEDEKAALKKKKKKMLKAKAR 385
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 392 EKLENESDDEGLSFKEKKAKRLKAQAK 472
E + S+DE + K+KK K LKA+A+
Sbjct: 359 ELIAKASEDEKAALKKKKKKMLKAKAR 385
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 392 EKLENESDDEGLSFKEKKAKRLKAQAK 472
E + S+DE + K+KK K LKA+A+
Sbjct: 359 ELIAKASEDEKAALKKKKKKMLKAKAR 385
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +2
Query: 383 AKSEKLENESD--DEGLSFKEKKAKRLKAQAKSS 478
+KS + +++SD D +KEK +KR+K + +SS
Sbjct: 300 SKSRETDDDSDGSDSEDDWKEKSSKRIKREVESS 333
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +2
Query: 383 AKSEKLENESD--DEGLSFKEKKAKRLKAQAKSS 478
+KS + +++SD D +KEK +KR+K + +SS
Sbjct: 300 SKSRETDDDSDGSDSEDDWKEKSSKRIKREVESS 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,789,346
Number of Sequences: 27780
Number of extensions: 146490
Number of successful extensions: 569
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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