Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M10
(496 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 88 3e-18
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 56 1e-08
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 54 4e-08
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 54 7e-08
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 54 7e-08
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 53 1e-07
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 51 4e-07
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 51 5e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 51 5e-07
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 50 7e-07
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 50 7e-07
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 50 7e-07
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 50 9e-07
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 50 9e-07
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 50 9e-07
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 50 1e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 49 2e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 49 2e-06
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 48 3e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 3e-06
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 48 3e-06
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 48 3e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 47 6e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 47 8e-06
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 45 2e-05
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 45 2e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 45 3e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 45 3e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 45 3e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 45 3e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 45 3e-05
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 45 3e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 44 4e-05
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 44 4e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 44 4e-05
At2g47310.1 68415.m05906 flowering time control protein-related ... 44 4e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 44 4e-05
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 44 6e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 7e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 44 7e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 44 7e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 44 7e-05
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 43 1e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 43 1e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 43 1e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 43 1e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 43 1e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 43 1e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 43 1e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 43 1e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 43 1e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 42 2e-04
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 42 2e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 42 2e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 42 2e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 42 2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 42 2e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 42 3e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 42 3e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 41 4e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 41 4e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 41 5e-04
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 41 5e-04
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 41 5e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 41 5e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 41 5e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 41 5e-04
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 40 7e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 40 7e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 40 0.001
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 40 0.001
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 40 0.001
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 40 0.001
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 40 0.001
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 39 0.002
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 39 0.002
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 39 0.002
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 39 0.002
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 39 0.002
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 39 0.002
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 38 0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.003
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.004
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 38 0.004
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 38 0.004
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 38 0.004
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 38 0.004
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.005
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 37 0.006
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 37 0.006
At5g51300.2 68418.m06360 splicing factor-related contains simila... 37 0.006
At5g51300.1 68418.m06359 splicing factor-related contains simila... 37 0.006
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 37 0.006
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 37 0.006
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 37 0.006
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 37 0.006
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 37 0.009
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 37 0.009
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 37 0.009
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 36 0.011
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 36 0.011
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 36 0.011
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 36 0.015
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 36 0.015
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 36 0.015
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.015
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.020
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.020
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.020
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 36 0.020
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.020
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 36 0.020
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 36 0.020
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 35 0.026
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.035
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.035
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.046
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.046
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.046
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 34 0.046
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 34 0.046
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 34 0.046
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 34 0.046
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.060
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 34 0.060
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 34 0.060
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 34 0.060
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 34 0.060
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.080
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 33 0.080
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 33 0.080
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 32 0.18
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 32 0.18
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.56
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 30 0.98
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 30 0.98
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 29 1.3
At1g14570.2 68414.m01733 UBX domain-containing protein contains ... 29 1.3
At1g14570.1 68414.m01732 UBX domain-containing protein contains ... 29 1.3
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 28 3.0
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 28 3.0
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 28 4.0
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 27 5.3
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 27 5.3
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 5.3
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 27 6.9
At3g26580.1 68416.m03318 expressed protein 27 9.2
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 27 9.2
At2g01980.1 68415.m00133 sodium proton exchanger, putative (NHX7... 27 9.2
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 27 9.2
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 88.2 bits (209), Expect = 3e-18
Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FVRNL Y +E+EL F +G ++EV+L +DK +S+G + +++PE A +A ELD
Sbjct: 264 FVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELD 323
Query: 344 GTAFCGRMLHLLPAK----SEKLENESDDEGLSFKEKKAKRLKAQAKSSHN--WNVL 496
++F GR+LH+LPAK S+K N++ + +FK+K+ ++ KA WN L
Sbjct: 324 NSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASEAGGDTKAWNSL 380
Score = 31.1 bits (67), Expect = 0.43
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDK 262
V+NL + +E+EL +F K+G L ++ LP K
Sbjct: 459 VKNLPFASTEKELAQMFGKFGSLDKIILPPTK 490
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ L++ +EQ L+ F K G + E + +D+V+ +SKG+G VTF + A KA E +
Sbjct: 37 FIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFN 96
Query: 344 GTAFCGRMLHLLPAKSEK 397
G GR + + AK+++
Sbjct: 97 GQQLNGRTIFVDYAKAKQ 114
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 54.4 bits (125), Expect = 4e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV+ +++ +E+ LT F +YG + +V++ +DK+ + KG+ VTF E A KA EL+
Sbjct: 24 FVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELN 83
Query: 344 GTAFCGRMLHLLPAKSEK 397
GR++ L K+ K
Sbjct: 84 AQLVDGRVVILDTTKAAK 101
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 53.6 bits (123), Expect = 7e-08
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL + +SE +L +FE +GP+ V LP+D Q KG+G + F+ EH+ A L+
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALN 327
Query: 344 G-TAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLKAQAKS 475
G GR + + +S + F + L A+S
Sbjct: 328 GKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDDDDGGGLALNAQS 372
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 53.6 bits (123), Expect = 7e-08
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
VRNL + +++L FE++GP+ ++ LP D +G+G + FM P A +A ++DG
Sbjct: 41 VRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDG 100
Query: 347 TAFCGRMLHLLPAKSEK 397
GR L ++ A+ +
Sbjct: 101 YLLLGRELTVVFAEENR 117
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 52.8 bits (121), Expect = 1e-07
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
VRNL + +++L FE++GP+ ++ LP D +G+G V FM P A A +DG
Sbjct: 40 VRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDG 99
Query: 347 TAFCGRMLHLLPAKSEK 397
GR L ++ A+ +
Sbjct: 100 YLLLGRELTVVFAEENR 116
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 51.2 bits (117), Expect = 4e-07
Identities = 26/88 (29%), Positives = 40/88 (45%)
Frame = +2
Query: 101 NIKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
++KK + FV L Y SE ++ FE YGP+ V+L D++ ++ K
Sbjct: 120 DLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPK 179
Query: 281 GYGTVTFMMPEHAVKAYTELDGTAFCGR 364
GY + +M AY + DG GR
Sbjct: 180 GYAFIEYMHTRDMKAAYKQADGQKIDGR 207
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 50.8 bits (116), Expect = 5e-07
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ +AY + E L F KYG + + + +D+ +S+G+G VTF E A A LD
Sbjct: 43 FIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALD 102
Query: 344 GTAFCGRML 370
G GR++
Sbjct: 103 GRDLHGRVV 111
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 50.8 bits (116), Expect = 5e-07
Identities = 26/77 (33%), Positives = 44/77 (57%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ L++ SE+ L FE +G L EV + +DK++ +SKGY + + E A A E++
Sbjct: 285 FITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMN 344
Query: 344 GTAFCGRMLHLLPAKSE 394
G G M+ + AK++
Sbjct: 345 GKIINGWMIVVDVAKTK 361
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 50.4 bits (115), Expect = 7e-07
Identities = 26/87 (29%), Positives = 48/87 (55%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ LA+ S++ L + FEKYG L E + +DK + +S+G+G +TF + +A ++
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEG 424
G GR + + A+ + D++G
Sbjct: 70 GMDLDGRTITVDKAQPHQGGAGRDNDG 96
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 50.4 bits (115), Expect = 7e-07
Identities = 31/105 (29%), Positives = 54/105 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N+ V+E+EL F + G +T L D+ +SKG+G V F PE A+ A
Sbjct: 307 YVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLKAQAKSS 478
G F G+ L++ A+ + +D + + + R++A+ SS
Sbjct: 366 GQMFHGKPLYVAIAQ------KKEDRKMQLQVQFGNRVEARKSSS 404
Score = 41.1 bits (92), Expect = 4e-04
Identities = 31/106 (29%), Positives = 53/106 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+++NL VSE L F ++G + + + D+ N +GY V F PE A +A ++
Sbjct: 204 YMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLKAQAKSSH 481
GT F + L++ +++K FKEK ++ K AK S+
Sbjct: 263 GTKFGSKCLYV--GRAQKKAEREQLLREQFKEKHEEQ-KMIAKVSN 305
Score = 33.9 bits (74), Expect = 0.060
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV+NL V+ L ++F+K+G + + + + +S+GYG V F + A A L+
Sbjct: 115 FVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 344 GTAFCGRMLHL--LPAKSEKLENESDDEGLSFKEKKA 448
T + +++ K+++++ E L K A
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDA 210
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 50.4 bits (115), Expect = 7e-07
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V LA V+E L F +G + +V P+D+ N + + +G VTF+ E A A +D
Sbjct: 16 YVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMD 75
Query: 344 GTAFCGRMLHLLPAKSEKLE 403
G GR+L + A EK++
Sbjct: 76 GAELYGRVLTVNYALPEKIK 95
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 50.0 bits (114), Expect = 9e-07
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
F+R LA + + L +LF YG L E + +DKV +SKGYG VTFM + A+ A E
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
+V N+ + + L N F YG + E L DKV +S+G+ + E A A +
Sbjct: 170 YVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 50.0 bits (114), Expect = 9e-07
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
F+R LA + + L +LF YG L E + +DKV +SKGYG VTFM + A+ A E
Sbjct: 78 FIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
+V N+ + + L N F YG + E L DKV +S+G+ + E A A +
Sbjct: 170 YVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 50.0 bits (114), Expect = 9e-07
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ L++ V EQ L + F +G + EV + DK + +S+G+G V F A+ A +D
Sbjct: 44 FIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMD 103
Query: 344 GTAFCGRMLHL 376
G GR L +
Sbjct: 104 GKGLLGRPLRI 114
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L+ ++Q L LF +G + E L D + KG+G +TF + A KA LD
Sbjct: 10 FVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLD 69
Query: 344 GTAFCGRMLHLLPAKS 391
G GR++ + AK+
Sbjct: 70 GKIVDGRLIFVEVAKN 85
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL++ V + L NLF + G + E + D+ + +SKG+G VT + KA L+
Sbjct: 252 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 311
Query: 344 GTAFCGRMLHLLPAKS 391
G GR + + A++
Sbjct: 312 GADLDGRQIRVSEAEA 327
Score = 46.0 bits (104), Expect = 1e-05
Identities = 28/87 (32%), Positives = 39/87 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL++ V +L LFE G + V + DKV +S+G+G VT A + +
Sbjct: 102 FVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEG 424
G F GR L + ES G
Sbjct: 162 GYEFEGRPLRVNAGPPPPKREESFSRG 188
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL++ V + L NLF + G + E + D+ + +SKG+G VT + KA L+
Sbjct: 260 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319
Query: 344 GTAFCGRMLHLLPAKS 391
G GR + + A++
Sbjct: 320 GADLDGRQIRVSEAEA 335
Score = 46.0 bits (104), Expect = 1e-05
Identities = 28/87 (32%), Positives = 39/87 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL++ V +L LFE G + V + DKV +S+G+G VT A + +
Sbjct: 102 FVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFN 161
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEG 424
G F GR L + ES G
Sbjct: 162 GYEFEGRPLRVNAGPPPPKREESFSRG 188
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 48.4 bits (110), Expect = 3e-06
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
VRNL + SE L F +G + EV L D+ +SKGY + F + A A +D
Sbjct: 44 VRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDR 103
Query: 347 TAFCGRMLHLLPAKSEK 397
+ GRM+++ AK K
Sbjct: 104 RMYNGRMIYIDIAKPGK 120
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V L++ +E L + FE++G L +N+ +DKV ++ KG+ + + E A+KA +
Sbjct: 80 YVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMH 139
Query: 344 GTAFCGRMLHLLPAKS 391
G GR++ + AK+
Sbjct: 140 GKFLDGRVIFVEEAKT 155
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV LA+ + L N FE++G + E + DK + +SKGYG VTF PE A KA
Sbjct: 10 FVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV LA+ + L N FE++G + E + DK + +SKGYG VTF PE A KA
Sbjct: 10 FVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.2 bits (107), Expect = 6e-06
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +2
Query: 116 QEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTV 295
+E+ +V NL Y ++ EL+ +F + G + +V + DKV +S+G+G V
Sbjct: 103 EEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Query: 296 TFMMPEHAVKAYTELDGTAFCGRMLHL-LPAKSEKLENE 409
T E A +A + + GR + + P ENE
Sbjct: 163 TMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENE 201
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 46.8 bits (106), Expect = 8e-06
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL++ V + L +LF + G + E + D+ + +SKG+G VT+ + A LD
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266
Query: 344 GTAFCGRMLHLLPAKS 391
G GR + + A++
Sbjct: 267 GADLDGRQIRVSEAEA 282
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL + V +L LFE G + V + DK+ +S+G+G VT A + +
Sbjct: 94 FVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFN 153
Query: 344 GTAFCGRMLHL 376
G GR L +
Sbjct: 154 GYELDGRPLRV 164
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV+ + VSE L +F ++G +T V + ++ QS GYG V F E A A ++
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 344 GTAFCGRML 370
G F GR +
Sbjct: 140 GKFFDGRFI 148
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/55 (43%), Positives = 31/55 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV LA+ + L FE+YG + E + DK +SKGYG VTF PE A +A
Sbjct: 27 FVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V N+ + + +L LF KYG + +V +P D+ S+G+ V + + A KA LDG
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
Query: 347 TAFCGRMLHLLPAK 388
GR + + AK
Sbjct: 80 RVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V N+ + + +L LF KYG + +V +P D+ S+G+ V + + A KA LDG
Sbjct: 20 VLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
Query: 347 TAFCGRMLHLLPAK 388
GR + + AK
Sbjct: 80 RVVDGREITVQFAK 93
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 44.8 bits (101), Expect = 3e-05
Identities = 23/86 (26%), Positives = 43/86 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V + + ++E +L +F +YG + +VNL DK +SKG+ + + + A L+
Sbjct: 39 YVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLN 98
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDE 421
G GR + + + K E D+E
Sbjct: 99 GALVLGRTIKVDHCGAYKKHEEEDEE 124
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 44.8 bits (101), Expect = 3e-05
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L++ + L F +G +TE + D+ +S+G+G V+F + A A E+D
Sbjct: 38 FVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMD 97
Query: 344 GTAFCGRMLHL 376
G GR + +
Sbjct: 98 GKELNGRQIRV 108
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 44.8 bits (101), Expect = 3e-05
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L++ + L F +G +TE + D+ +S+G+G V+F + A A E+D
Sbjct: 38 FVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMD 97
Query: 344 GTAFCGRMLHL 376
G GR + +
Sbjct: 98 GKELNGRQIRV 108
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/88 (27%), Positives = 45/88 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L+ + + ++L + F +G L + + D+ + +SKG+G VT+ E A KA E++
Sbjct: 37 FVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMN 96
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGL 427
G ++ + PA+ + E L
Sbjct: 97 AKFLDGWVIFVDPARPREPRRPLQQEPL 124
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 44.4 bits (100), Expect = 4e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+NL +S+++L +F +G +T + D N SKG G V F PE A +A ++L
Sbjct: 135 YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLS 193
Query: 344 GTAFCGRMLHLLPAKSEK 397
G + L++ A+ ++
Sbjct: 194 GKMIESKPLYVAIAQRKE 211
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/101 (26%), Positives = 51/101 (50%)
Frame = +2
Query: 113 RQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGT 292
R+++ + +V+NLA ++ +L N F +YG +T + D +SKG+G
Sbjct: 15 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGF 73
Query: 293 VTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLENESD 415
V F + A +A L+G F + ++ A+ +K E E++
Sbjct: 74 VNFENADDAARAVESLNGHKFDDKEWYVGRAQ-KKSERETE 113
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.4 bits (100), Expect = 4e-05
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
VRN+ +EL FE++GP+ +V +P D + Q +G+ V F+ A +A ++
Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNR 110
Query: 347 TAFCGRMLHLLPAKSEKLENE 409
+F GR + ++ A + E
Sbjct: 111 RSFAGREITVVVASESRKRPE 131
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 44.4 bits (100), Expect = 4e-05
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = +2
Query: 113 RQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGT 292
+Q +T F NL+Y ++ ++ N F++ G + +V L + KGYG
Sbjct: 370 KQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLS-SFDDGSFKGYGH 428
Query: 293 VTFMMPEHAVKAYTELDGTAFCGRMLHL 376
+ F PE A KA E++G GR + L
Sbjct: 429 IEFASPEEAQKA-LEMNGKLLLGRDVRL 455
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +2
Query: 194 EQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLH 373
++EL + F K G +T V++P D+ S+G+ + +L G+ G +H
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL---TSGFDEALQLSGSEIGGGNIH 552
Query: 374 LLPAKSEKLENESDDEGLSFKEKKAK 451
+ E+ DEG S A+
Sbjct: 553 V-----EESRPRDSDEGRSSNRAPAR 573
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 44.4 bits (100), Expect = 4e-05
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 101 NIKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
+++KR+ Q+ +V ++ +E ++ +FEKYG +TE+ LP DK+ +
Sbjct: 92 SLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERA 151
Query: 281 GYGTVTFMMPEHAVKAYTEL-DGTAFCGRMLHLLPAKSEKLENESDDEGLS 430
Y + + E A L + F G M LP K E E + G +
Sbjct: 152 AYCFIKYKKVEEGNAAIAALTEQFTFPGEM---LPVKVRFAEAERERIGFA 199
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+VR L ++ E+ +F +YG + ++ + +D + +GY V F E A+ A L+
Sbjct: 210 YVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQFSCKEMALAAIKALN 268
Query: 344 G 346
G
Sbjct: 269 G 269
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 44.4 bits (100), Expect = 4e-05
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV ++Y E L F KYG + + + +D+ +S+G+ VTF E A A +LD
Sbjct: 37 FVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA-MQLD 95
Query: 344 GTAFCGRMLHL 376
G GR + +
Sbjct: 96 GQDLHGRRIRV 106
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV LA+ + L F++YG + E + DK +SKGYG VTF PE A +A
Sbjct: 27 FVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 43.6 bits (98), Expect = 7e-05
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV N+ Y +E++L + + GP+ L D+ + KGYG + E A+ A L
Sbjct: 12 FVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQ 71
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDE 421
GR L + A+++K +++ D+
Sbjct: 72 SYEINGRQLRVDFAENDKGTDKTRDQ 97
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 43.6 bits (98), Expect = 7e-05
Identities = 27/98 (27%), Positives = 46/98 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F++NL + + L F +GP+ + +D + QSKGYG V + E A A +L+
Sbjct: 136 FIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRL 457
G + +++ P KL+ + E + F K L
Sbjct: 195 GMLLNDKQVYVGPF-VHKLQRDPSGEKVKFTNVYVKNL 231
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+NL V++ +L F +G +T + D + S+G G V F PE A +A TE++
Sbjct: 330 YVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 344 GTAFCGRMLHLLPAKSEK 397
G + L++ A+ ++
Sbjct: 389 GKMIVTKPLYVALAQRKE 406
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 43.6 bits (98), Expect = 7e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFE-KYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +LA V++ L F Y + + ID+V ++KGYG V F ++A TE+
Sbjct: 158 FVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEM 217
Query: 341 DGTAFCGRMLHLLPAKSEK 397
+G R + + PA S+K
Sbjct: 218 NGVPCSTRPMRIGPAASKK 236
Score = 29.9 bits (64), Expect = 0.98
Identities = 23/84 (27%), Positives = 34/84 (40%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L V++ L N+F +YG + V +P K G V F A +A L+
Sbjct: 264 FVGGLDASVTDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLN 317
Query: 344 GTAFCGRMLHLLPAKSEKLENESD 415
G G + L +S + D
Sbjct: 318 GVQLGGTTVRLSWGRSPSNKQSGD 341
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 43.6 bits (98), Expect = 7e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFE-KYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +LA V++ L F Y + + ID+V ++KGYG V F ++A TE+
Sbjct: 158 FVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEM 217
Query: 341 DGTAFCGRMLHLLPAKSEK 397
+G R + + PA S+K
Sbjct: 218 NGVPCSTRPMRIGPAASKK 236
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDK 262
FV L V++ L N+F +YG + V +P K
Sbjct: 264 FVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
+V L + ++ L N F+++G + VN+ D+ +S+GYG VTF E A +A
Sbjct: 16 YVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/99 (23%), Positives = 54/99 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+NL +++ EL F KYG ++ + D+ + S+ +G V F+ PE A A +++
Sbjct: 228 YVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
G + +L++ +++K + ++ F++++ R +
Sbjct: 287 GISLGEDVLYV--GRAQKKSDREEELRRKFEQERISRFE 323
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/78 (25%), Positives = 45/78 (57%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+++NL V++++L +F +YG +T + ++ S+G+G V + PE A+ A E++
Sbjct: 331 YLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQG-LSRGFGFVAYSNPEEALLAMKEMN 389
Query: 344 GTAFCGRMLHLLPAKSEK 397
G + L++ A+ ++
Sbjct: 390 GKMIGRKPLYVALAQRKE 407
Score = 35.1 bits (77), Expect = 0.026
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V +L V+E L +LF + P+ + + D + H+S GY V F PE A +A L+
Sbjct: 48 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 344 GTAFCGRMLHLL 379
R + ++
Sbjct: 107 YAPIRDRPIRIM 118
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLF-EKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +LA VS+ L F EKY + + +D +SKGYG V F KA TE+
Sbjct: 202 FVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEM 261
Query: 341 DGTAFCGRMLHLLPAKSEKLENESDDEG 424
+G R + + PA K G
Sbjct: 262 NGVKCSSRAMRIGPATPRKTNGYQQQGG 289
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/78 (26%), Positives = 44/78 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V L++ V+E++L + F K G +T+V+L +D +S+G+G ++ A + LD
Sbjct: 78 YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLD 137
Query: 344 GTAFCGRMLHLLPAKSEK 397
+ GR++ + A+ +
Sbjct: 138 HSVLQGRVITVEKARRRR 155
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEK-YGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +LA V++ L++ F+ YG + + +D+ +SKGYG V F ++A TE+
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216
Query: 341 DGTAFCGRMLHLLPAKSE 394
+G R + + PA ++
Sbjct: 217 NGQYCSTRPMRIGPAANK 234
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/77 (25%), Positives = 40/77 (51%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
+RNL +L + FE++GPL ++ LP + + +G+G V + E A +A ++
Sbjct: 51 IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNH 110
Query: 347 TAFCGRMLHLLPAKSEK 397
GR + ++ A+ +
Sbjct: 111 KVIGGREIAIVFAEENR 127
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/76 (27%), Positives = 43/76 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV LA+ ++++L F ++G + + + D+ + +S+G+G VTF + A E++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 344 GTAFCGRMLHLLPAKS 391
G GR++ + A+S
Sbjct: 69 GKELDGRVITVNEAQS 84
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/76 (27%), Positives = 43/76 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV LA+ ++++L F ++G + + + D+ + +S+G+G VTF + A E++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 344 GTAFCGRMLHLLPAKS 391
G GR++ + A+S
Sbjct: 69 GKELDGRVITVNEAQS 84
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/76 (27%), Positives = 43/76 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV LA+ ++++L F ++G + + + D+ + +S+G+G VTF + A E++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 344 GTAFCGRMLHLLPAKS 391
G GR++ + A+S
Sbjct: 69 GKELDGRVITVNEAQS 84
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/74 (27%), Positives = 38/74 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ L++ + L + F +G + + + +D+ +S+G+G V F A A +E+D
Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97
Query: 344 GTAFCGRMLHLLPA 385
G GR + + PA
Sbjct: 98 GKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/74 (27%), Positives = 38/74 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ L++ + L + F +G + + + +D+ +S+G+G V F A A +E+D
Sbjct: 38 FIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97
Query: 344 GTAFCGRMLHLLPA 385
G GR + + PA
Sbjct: 98 GKELNGRHIRVNPA 111
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
FV LA+ E+ FE++G + E + DK +SKGYG VTF + A +A +
Sbjct: 20 FVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
FV LA+ E+ FE++G + E + DK +SKGYG VTF + A +A +
Sbjct: 20 FVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/78 (25%), Positives = 46/78 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+++NL V +++L +F +YG +T + ++ S+G+G V + PE A++A +E++
Sbjct: 335 YLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMN 393
Query: 344 GTAFCGRMLHLLPAKSEK 397
G + L++ A+ ++
Sbjct: 394 GKMIGRKPLYIALAQRKE 411
Score = 37.1 bits (82), Expect = 0.006
Identities = 22/99 (22%), Positives = 50/99 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+NL + E EL F K+G ++ + D+ + S+ +G V F E A A +++
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLK 460
G + +L++ +++K ++ F++++ R +
Sbjct: 291 GISLGDDVLYV--GRAQKKSEREEELRRKFEQERINRFE 327
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 113 RQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGT 292
+ E N FV LA+ + FE++G + E + DK +SKGYG
Sbjct: 8 QMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGF 67
Query: 293 VTFMMPEHAVKA 328
VTF E A++A
Sbjct: 68 VTFKEAEAAMRA 79
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 42.3 bits (95), Expect = 2e-04
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE-- 337
FV L + + + L +FE YG + E + IDK ++KG+G V F + A +A E
Sbjct: 107 FVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPK 166
Query: 338 ---LDGTAFCGRMLHLLPAKSEK 397
L+ TA C ++ + PA S K
Sbjct: 167 KRILNRTATC-QLASMGPAASGK 188
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 42.3 bits (95), Expect = 2e-04
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE-- 337
FV L + + + L +FE YG + E + IDK ++KG+G V F + A +A E
Sbjct: 107 FVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPK 166
Query: 338 ---LDGTAFCGRMLHLLPAKSEK 397
L+ TA C ++ + PA S K
Sbjct: 167 KRILNRTATC-QLASMGPAASGK 188
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 42.3 bits (95), Expect = 2e-04
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLF-EKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +L+ VS+ L F EKY + + +D +SKGYG V F KA TE+
Sbjct: 200 FVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEM 259
Query: 341 DGTAFCGRMLHLLPAKSEKLENESDDEG 424
+G R + + PA K G
Sbjct: 260 NGVKCSSRAMRIGPATPRKTNGYQQQGG 287
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 42.3 bits (95), Expect = 2e-04
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLF-EKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +L+ VS+ L F EKY + + +D +SKGYG V F KA TE+
Sbjct: 200 FVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEM 259
Query: 341 DGTAFCGRMLHLLPAKSEKLENESDDEG 424
+G R + + PA K G
Sbjct: 260 NGVKCSSRAMRIGPATPRKTNGYQQQGG 287
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
FV LA+ E+ F+++G + E + DK +SKGYG VTF + A +A +
Sbjct: 20 FVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/69 (28%), Positives = 40/69 (57%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V L++ V+E++L + F K G +T+V+L +D +S+G+G ++ A + LD
Sbjct: 48 YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLD 107
Query: 344 GTAFCGRML 370
+ GR++
Sbjct: 108 HSVLQGRVI 116
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NLAY V+ Q L LFE+ G + + ++ QS+G+G VT + A A + +
Sbjct: 153 FVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 212
Query: 344 GTAFCGRML 370
GR+L
Sbjct: 213 RYDLNGRLL 221
Score = 40.7 bits (91), Expect = 5e-04
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL + V L LF ++G + E + D+ +S+G+G VT + +A + LD
Sbjct: 247 YVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALD 306
Query: 344 GTAFCGRMLHL 376
G GR + +
Sbjct: 307 GQNLEGRAIRV 317
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 41.9 bits (94), Expect = 2e-04
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+NL V++ L LF +YG ++ V + D + +S+G+G V F PE+A KA L
Sbjct: 205 YVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMESLC 263
Query: 344 GTAFCGRMLHLLPA--KSEKLE 403
G + L + A K E+ E
Sbjct: 264 GLQLGSKKLFVGKALKKDERRE 285
Score = 35.5 bits (78), Expect = 0.020
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+NL ++ L +F +G + ++ + + N QSKG+G V F + AV A + L
Sbjct: 115 YVKNLDSSITSSCLERMFCPFGSI--LSCKVVEENGQSKGFGFVQFDTEQSAVSARSALH 172
Query: 344 GTAFCGRML 370
G+ G+ L
Sbjct: 173 GSMVYGKKL 181
Score = 34.3 bits (75), Expect = 0.046
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+NL+ ++E L +F YG + + + N +SKG+G V F E + +A L+
Sbjct: 307 YVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 344 GTAFCGR 364
G G+
Sbjct: 366 GFLVDGK 372
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 41.5 bits (93), Expect = 3e-04
Identities = 25/69 (36%), Positives = 34/69 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL Y V Q L LFE+ G + + ++ QS+G+G VT E A KA + +
Sbjct: 116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFN 175
Query: 344 GTAFCGRML 370
GR L
Sbjct: 176 SFEVNGRRL 184
Score = 35.1 bits (77), Expect = 0.026
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL + V L LF ++G + + + D+ +S+G+G V A LD
Sbjct: 210 YVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALD 269
Query: 344 GTAFCGRML 370
G GR +
Sbjct: 270 GQNLEGRAI 278
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 41.5 bits (93), Expect = 3e-04
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEK-YGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +LA V++ LT F+ Y + + D+ +SKGYG V F ++A TE+
Sbjct: 176 FVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEM 235
Query: 341 DGTAFCGRMLHLLPAKSEK 397
+G R + PA ++K
Sbjct: 236 NGQYCSSRPMRTGPAANKK 254
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/75 (32%), Positives = 39/75 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FVR L + + + L FE YG +TE ++ +DK ++KG+G V F + A A +
Sbjct: 166 FVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPE 225
Query: 344 GTAFCGRMLHLLPAK 388
+ R + LPA+
Sbjct: 226 KRMY-NRTVSCLPAR 239
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/86 (25%), Positives = 46/86 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L++ V+E++L + F++YG +TE + + + + +G+G +TF A A +
Sbjct: 15 FVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMH 74
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDE 421
G +++ + A+ K+ E D+
Sbjct: 75 GRELGNKVISVNKAE-PKVGGEDVDQ 99
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/86 (25%), Positives = 46/86 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L++ V+E++L + F++YG +TE + + + + +G+G +TF A A +
Sbjct: 15 FVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMH 74
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDE 421
G +++ + A+ K+ E D+
Sbjct: 75 GRELGNKVISVNKAE-PKVGGEDVDQ 99
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 41.1 bits (92), Expect = 4e-04
Identities = 20/76 (26%), Positives = 42/76 (55%)
Frame = +2
Query: 170 RNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGT 349
+N+ + + +++ +LFEKYG + ++ + + K +++G + PE A A L+
Sbjct: 99 QNVPWTSTPEDIRSLFEKYGSVIDIEMSMHK-KERNRGLVFIEMASPEEAATALKSLESC 157
Query: 350 AFCGRMLHLLPAKSEK 397
+ GR L + AK++K
Sbjct: 158 EYEGRRLKVDYAKTKK 173
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV LA+ ++ + + F KYG + E + DK+ +SKGYG VTF + A +A
Sbjct: 20 FVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 40.7 bits (91), Expect = 5e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV LA+ ++ + FE++G + E + DK + +SKGYG VTF E A A
Sbjct: 16 FVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 40.7 bits (91), Expect = 5e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV LA+ ++ + FE++G + E + DK + +SKGYG VTF E A A
Sbjct: 16 FVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 40.7 bits (91), Expect = 5e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV LA+ ++ + FE++G + E + DK + +SKGYG VTF E A A
Sbjct: 16 FVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 5e-04
Identities = 31/90 (34%), Positives = 43/90 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL + E+E+ +LF KYGP+ +++L KV + GY V F A A D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSF 433
G F G L + A + SDD SF
Sbjct: 67 GYDFDGHRLRVELAHGGR--RSSDDTRGSF 94
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 40.7 bits (91), Expect = 5e-04
Identities = 31/90 (34%), Positives = 43/90 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL + E+E+ +LF KYGP+ +++L KV + GY V F A A D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSF 433
G F G L + A + SDD SF
Sbjct: 67 GYDFDGHRLRVELAHGGR--RSSDDTRGSF 94
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.7 bits (91), Expect = 5e-04
Identities = 31/90 (34%), Positives = 43/90 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL + E+E+ +LF KYGP+ +++L KV + GY V F A A D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSF 433
G F G L + A + SDD SF
Sbjct: 67 GYDFDGHRLRVELAHGGR--RSSDDTRGSF 94
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 40.3 bits (90), Expect = 7e-04
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L + L + F++YG + + +DKV+ QSKGYG + F
Sbjct: 131 FVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILF 176
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N++ + Q+L F ++G + E L +DK + KG+ + E A KA E
Sbjct: 230 YVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPH 289
Query: 344 GTAFCGRMLH 373
T F G +LH
Sbjct: 290 KT-FEGHVLH 298
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/88 (25%), Positives = 39/88 (44%)
Frame = +2
Query: 113 RQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGT 292
+Q +T F NL++ + ++ N F++ G + +V ++ + +G+G
Sbjct: 283 KQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGH 342
Query: 293 VTFMMPEHAVKAYTELDGTAFCGRMLHL 376
V F E A KA E G GR + L
Sbjct: 343 VEFASSEEAQKA-LEFHGRPLLGREIRL 369
Score = 26.6 bits (56), Expect = 9.2
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNL----FEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAY 331
FV+ +SE ++ N F G + V++PID+ SKG + F E KA
Sbjct: 404 FVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKA- 460
Query: 332 TELDGTAFCG 361
EL+G+ G
Sbjct: 461 LELNGSDMGG 470
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV+ + VSE L +F ++G +T V + ++ QS GYG V F E A A ++
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
Query: 344 G 346
G
Sbjct: 121 G 121
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L ++++E FE YGP+T+V + D+ ++ +G+G V+F
Sbjct: 113 FVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
Score = 31.5 bits (68), Expect = 0.32
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMP 310
FV +++ E +L F YG +++ + DK+ + +G+G V F P
Sbjct: 9 FVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FVR + +++ L FE YG + E ++ +DK + KGYG V F + A +A
Sbjct: 411 FVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV NL++ V+ + L F + G + + D +S+GYG V + A LD
Sbjct: 180 FVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLD 239
Query: 344 GTAFCGRMLHLLPAKSEK 397
G GR + + A+ +K
Sbjct: 240 GFELEGRAIRVNLAQGKK 257
Score = 32.3 bits (70), Expect = 0.18
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +2
Query: 173 NLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTA 352
NL Y V L + + + V + ++ QS+G+ VT E LDGT
Sbjct: 91 NLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTE 150
Query: 353 FCGRMLHLLPAKSEKLENE 409
+ GR L + A K E
Sbjct: 151 YLGRALKVNFADKPKPNKE 169
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+VRNL + ++ +E+ ++F KYG + ++ + DK +KG V + A A L
Sbjct: 22 YVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKA---TKGTAFVVYEDIYDAKNAVDHLS 78
Query: 344 GTAFCGRMLHLLPAKSEKL-----ENESDDEGLSFKEK 442
G R L +L + K+ + +S+DE +EK
Sbjct: 79 GFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEK 116
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 113 RQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGT 292
R+E+ +V+NL+ ++ EL F +YG ++ + D + +S+ +G
Sbjct: 211 RKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGF 269
Query: 293 VTFMMPEHAVKAYTELDGTAF 355
V F PE A +A L+G F
Sbjct: 270 VNFENPEDAARAVEALNGKKF 290
Score = 33.5 bits (73), Expect = 0.080
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V +L + V++ +L + F + + V + D + S GYG V + + A KA +L+
Sbjct: 49 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLN 108
Query: 344 GTAFCGRMLHL 376
+ G+M+ +
Sbjct: 109 YSYLNGKMIRI 119
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV + VSE + + FE+YG +T++ +P D + Q +G G +TF
Sbjct: 94 FVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITF 139
Score = 30.3 bits (65), Expect = 0.74
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V + + + L + K+G L + + D+ +S+G+G VTF E A A L G
Sbjct: 7 VLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA---LKG 63
Query: 347 TAFCGRML 370
F G +
Sbjct: 64 EHFLGNRI 71
Score = 29.9 bits (64), Expect = 0.98
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L S +L + F ++G + + +P D +G+G VTF
Sbjct: 243 FVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV LA+ EQ + F ++G + + + ID+ +SKG+ VTF + A ++
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 344 GTAFCGR 364
G GR
Sbjct: 107 GQELDGR 113
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/86 (27%), Positives = 37/86 (43%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L Y +E ++ L E +GPL NL D+ SKGY + P A L+
Sbjct: 378 FVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALN 437
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDE 421
G + L + A ++ + + E
Sbjct: 438 GIKMGDKTLTVRRAIQGAIQPKPEQE 463
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ +L Y V E LT+ F + G L V + +K+ Q +GYG + F+ A + +
Sbjct: 27 WIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYN 86
Query: 344 GTAFCGRML 370
GT G L
Sbjct: 87 GTQMPGTEL 95
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL + E+E+ +LF KYGP+ +++L K+ + GY V F A A D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 344 GTAFCGRMLHL 376
G F G L +
Sbjct: 67 GYDFDGHHLRV 77
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/71 (33%), Positives = 36/71 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL + E+E+ +LF KYGP+ +++L K+ + GY V F A A D
Sbjct: 10 YVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 344 GTAFCGRMLHL 376
G F G L +
Sbjct: 67 GYDFDGHHLRV 77
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
+V L ++ + L + FE++G + + D +SKG+G VTF E A +A
Sbjct: 12 YVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/87 (20%), Positives = 46/87 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L+ V++++L F ++G + + + +++ +S+G+G +TF ++ E+
Sbjct: 10 FVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMH 69
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEG 424
G F R++ + A+ + ++ + G
Sbjct: 70 GRDFGDRVISVNRAEPKLGRDDGESHG 96
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/62 (27%), Positives = 36/62 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV LA+ ++++L F ++G + + + D+ + +S+G+G VTF + A E++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 344 GT 349
G+
Sbjct: 69 GS 70
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NL+ ++ L F YG + + + D+ +S+G+G VT+ A A + +D
Sbjct: 6 YVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMD 65
Query: 344 GTAFCGR 364
G GR
Sbjct: 66 GKELNGR 72
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV NL + + +L FE++G + + N+ + +SKGYG +TF
Sbjct: 15 FVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV LA+ ++ L F +YG + + + D+ +S+G+G VTF + A ++
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 344 GTAFCGRMLHLLPAKS 391
G GR + + A+S
Sbjct: 71 GQDLDGRSITVNEAQS 86
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV LA+ ++ L F +YG + + + D+ +S+G+G VTF + A ++
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 344 GTAFCGRMLHLLPAKS 391
G GR + + A+S
Sbjct: 71 GQDLDGRSITVNEAQS 86
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 37.5 bits (83), Expect = 0.005
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V L Y ++E+ + +F YG + V + D+ + + K YG VTF A A ++D
Sbjct: 10 YVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDR-SVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 344 GTAFCGRMLHL 376
G + GR + +
Sbjct: 69 GKSIGGRAVRV 79
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 37.1 bits (82), Expect = 0.006
Identities = 24/67 (35%), Positives = 33/67 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV +L + ++ EL KYG + EV +K + +SKGY V F P A L+
Sbjct: 237 FVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALN 296
Query: 344 GTAFCGR 364
G F GR
Sbjct: 297 GYPFNGR 303
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 116 QEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTV 295
+ QT FV L+ + + L F ++G + + + D+V+ SKG+G V
Sbjct: 43 ESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
Query: 296 TFMMPEHAVKAYTELDG 346
+ E + K +DG
Sbjct: 103 RYATLEDSAKGIAGMDG 119
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ L ++ + L NLF +G + + D+V SKGYG V + + A A ++
Sbjct: 483 YIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMN 542
Query: 344 GTAFCGRML 370
G F GR L
Sbjct: 543 GYRFEGRTL 551
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
++ L ++ + L NLF +G + + D+V SKGYG V + + A A ++
Sbjct: 483 YIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMN 542
Query: 344 GTAFCGRML 370
G F GR L
Sbjct: 543 GYRFEGRTL 551
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.1 bits (82), Expect = 0.006
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V L +SE+ L LF + GP+ V +P D+V + + YG + + E A A L+
Sbjct: 28 YVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLN 87
Query: 344 GTAFCGRMLHLLPAKSEK 397
G+ + + A +K
Sbjct: 88 MIKLHGKPIRVNKASQDK 105
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 37.1 bits (82), Expect = 0.006
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 194 EQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
E+++TN F +G + +NL +D+ + KGY + + E A A + ++G
Sbjct: 108 EEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V +L+ V+E L +F +G + V + +D+ + +G+G V F A KA +DG
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161
Query: 347 TAFCGRML 370
G+++
Sbjct: 162 AQIDGKVV 169
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 37.1 bits (82), Expect = 0.006
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V +L+ V+E L +F +G + V + +D+ + +G+G V F A KA +DG
Sbjct: 102 VDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDG 161
Query: 347 TAFCGRML 370
G+++
Sbjct: 162 AQIDGKVV 169
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N+ + Q+L F K+G + E L +DK + KG+ + E A +A E
Sbjct: 248 YVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPH 307
Query: 344 GTAFCGRMLH 373
T F G +LH
Sbjct: 308 KT-FEGHILH 316
Score = 35.9 bits (79), Expect = 0.015
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L + + L F++YG + + DK++ +SKGYG + +
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N+ + Q+L F K+G + E L +DK + KG+ + E A +A E
Sbjct: 248 YVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPH 307
Query: 344 GTAFCGRMLH 373
T F G +LH
Sbjct: 308 KT-FEGHILH 316
Score = 35.9 bits (79), Expect = 0.015
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L + + L F++YG + + DK++ +SKGYG + +
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 36.7 bits (81), Expect = 0.009
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N+ + Q+L F K+G + E L +DK + KG+ + E A +A E
Sbjct: 248 YVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPH 307
Query: 344 GTAFCGRMLH 373
T F G +LH
Sbjct: 308 KT-FEGHILH 316
Score = 35.9 bits (79), Expect = 0.015
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L + + L F++YG + + DK++ +SKGYG + +
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 36.3 bits (80), Expect = 0.011
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFE-KYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +LA VS+ L F +Y + + ID +SKGYG V F +A TE+
Sbjct: 216 FVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEM 275
Query: 341 DGTAFC 358
+G AFC
Sbjct: 276 NG-AFC 280
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 36.3 bits (80), Expect = 0.011
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
FV L ++ E EL N F YG + E + D +S+G+G VTF + + +++
Sbjct: 160 FVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Score = 31.9 bits (69), Expect = 0.24
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTE 337
FV +++ + + N F K+G + + + D++ +G+G VTF A K E
Sbjct: 69 FVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 36.3 bits (80), Expect = 0.011
Identities = 23/101 (22%), Positives = 43/101 (42%)
Frame = +2
Query: 101 NIKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSK 280
N+ + T FV L + ++ E+ ++ +YG + E+ ++V+ +SK
Sbjct: 184 NVMMNKSPTQSFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSK 243
Query: 281 GYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKLE 403
GY V F A ++G F G+ + A E L+
Sbjct: 244 GYCQVEFYDSAAAAACKEGMNGFIFNGKACVVAFASPETLK 284
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L++ +E L + KYG + + L V S+GYG V + + ++AY +
Sbjct: 67 FVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAH 126
Query: 344 GTAFCGR 364
+ GR
Sbjct: 127 HSLIDGR 133
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 35.9 bits (79), Expect = 0.015
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L ++ E FE YGP+++ + ID+ + +G+G V+F
Sbjct: 113 FVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF 158
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 35.9 bits (79), Expect = 0.015
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FVR L E++LT++F K+G + + + D+ +S+ +G VTF
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTF 55
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.015
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L+ +E+E + FE++G T+V + D V ++ +G+G VT+
Sbjct: 123 FVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY 168
Score = 35.5 bits (78), Expect = 0.020
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKA 328
FV +A SE+ L F +YG + E + +KV + +G+G V F VKA
Sbjct: 9 FVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.5 bits (78), Expect = 0.020
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L ++E+E N F+++G + +V + D + +G+G +TF
Sbjct: 113 FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMP 310
F+ +++ E+ L + F YG + E + D+ +++G+G + F P
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.5 bits (78), Expect = 0.020
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L ++E+E N F+++G + +V + D + +G+G +TF
Sbjct: 113 FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMP 310
F+ +++ E+ L + F YG + E + D+ +++G+G + F P
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.5 bits (78), Expect = 0.020
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV L ++E+E N F+++G + +V + D + +G+G +TF
Sbjct: 113 FVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF 158
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMP 310
F+ +++ E+ L + F YG + E + D+ +++G+G + F P
Sbjct: 9 FIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 35.5 bits (78), Expect = 0.020
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA 319
F+ +++ E+ L F KYG L E + D+ +++G+G + F P A
Sbjct: 18 FIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVA 69
Score = 34.7 bits (76), Expect = 0.035
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA----VKAY 331
FV L ++E E N F+++G + +V + D + +G+G +TF E K +
Sbjct: 125 FVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTF 184
Query: 332 TELDG 346
EL+G
Sbjct: 185 HELNG 189
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.5 bits (78), Expect = 0.020
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V NLA V+++ L NLF + G + + +S G+G VTF E A L+
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
Query: 344 GTAFCGRMLHL 376
+ G+ + +
Sbjct: 240 NSLLEGQKIRV 250
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 35.5 bits (78), Expect = 0.020
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV + V+E EL + F KYG + E + D ++S+G+G V F
Sbjct: 112 FVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 215 FEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMP 310
F KYG +T+ + D+ Q +G+G +TF P
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 35.5 bits (78), Expect = 0.020
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV + V+E EL + F KYG + E + D ++S+G+G V F
Sbjct: 112 FVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 215 FEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMP 310
F KYG +T+ + D+ Q +G+G +TF P
Sbjct: 39 FGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.1 bits (77), Expect = 0.026
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 191 SEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRML 370
+E +L G +TEV + +K + KGY VTF + A +A L+ T F G+ +
Sbjct: 104 TEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
Score = 35.1 bits (77), Expect = 0.026
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+++NL ++++ L LFE +G + +V +P K + YG V + ++A +
Sbjct: 271 YIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE 330
Query: 344 GTAFCGRMLHLLPAKSE 394
G ML AK +
Sbjct: 331 RYEIDGHMLDCTLAKPQ 347
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 34.7 bits (76), Expect = 0.035
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ N+ +QEL F+ +G + + +DK SK +G +++ A A ++
Sbjct: 342 FIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMN 401
Query: 344 GTAFCGRML 370
G G+ L
Sbjct: 402 GCQLSGKKL 410
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L VSE E+ +LF +YG + ++ + + SKG + + E AV A L+
Sbjct: 112 FVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEALN 170
Query: 344 G 346
G
Sbjct: 171 G 171
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.7 bits (76), Expect = 0.035
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ N+ +QEL F+ +G + + +DK SK +G +++ A A ++
Sbjct: 333 FIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMN 392
Query: 344 GTAFCGRML 370
G G+ L
Sbjct: 393 GCQLSGKKL 401
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L VSE E+ +LF +YG + ++ + + SKG + + E AV A L+
Sbjct: 103 FVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSL-QTSKGCLFLKYESKEQAVAAMEALN 161
Query: 344 G 346
G
Sbjct: 162 G 162
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 34.3 bits (75), Expect = 0.046
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV +L +E+E+ +F ++G + +V L D+ QS+G G V + E A+ A L+
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLN 272
Query: 344 GT 349
GT
Sbjct: 273 GT 274
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV ++ +E+E+ FE++G + EV L DK Q +G V + + A +A L
Sbjct: 123 FVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 34.3 bits (75), Expect = 0.046
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV +L +E+E+ +F ++G + +V L D+ QS+G G V + E A+ A L+
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLN 272
Query: 344 GT 349
GT
Sbjct: 273 GT 274
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV ++ +E+E+ FE++G + EV L DK Q +G V + + A +A L
Sbjct: 123 FVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.3 bits (75), Expect = 0.046
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L VSE E+ +LF KYG + ++ + + SKG + + E AV A ++
Sbjct: 109 FVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 344 G 346
G
Sbjct: 168 G 168
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKG 283
FV + +SE +L LF+++ + EVN+ DK+ S+G
Sbjct: 21 FVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRG 60
Score = 30.3 bits (65), Expect = 0.74
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
F+ N+ +QEL F+ +G + + +DK SK +G ++F
Sbjct: 351 FIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 34.3 bits (75), Expect = 0.046
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L VSE E+ +LF KYG + ++ + + SKG + + E AV A ++
Sbjct: 109 FVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 344 G 346
G
Sbjct: 168 G 168
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
F+ N+ +QEL F+ +G + + +DK SK +G V++ A A ++
Sbjct: 352 FIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMN 411
Query: 344 GTAFCGRML 370
G G+ L
Sbjct: 412 GRHLGGKKL 420
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKG 283
FV + +SE +L LF+++ + EVN+ DK+ S+G
Sbjct: 21 FVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRG 60
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 34.3 bits (75), Expect = 0.046
Identities = 22/90 (24%), Positives = 45/90 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V+N+ S ++L LF+++G +T++ P K + +G V + A+KA + +
Sbjct: 295 YVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTE 352
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSF 433
G+ L ++ AK + E + D S+
Sbjct: 353 RYEVNGQPLEVVLAKPQ-AERKHDPSSYSY 381
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 34.3 bits (75), Expect = 0.046
Identities = 19/87 (21%), Positives = 36/87 (41%)
Frame = +2
Query: 110 KRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYG 289
KR+ + V L Y ++ +L F + GP+ L +K + + +G+
Sbjct: 5 KRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFA 64
Query: 290 TVTFMMPEHAVKAYTELDGTAFCGRML 370
V F + E +A +G+ GR +
Sbjct: 65 FVKFALQEDVNRAIELKNGSTVGGRRI 91
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/84 (22%), Positives = 37/84 (44%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
+RNL + ++ +F G + +V +P + KG+ V F + A A + +G
Sbjct: 335 IRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
Query: 347 TAFCGRMLHLLPAKSEKLENESDD 418
F R + + A + + N + D
Sbjct: 395 HMFGKRPIAVDWAVPKNIYNGAAD 418
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 34.3 bits (75), Expect = 0.046
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV+NL + ++L ++F +G + + D + SKGYG V F A +
Sbjct: 34 FVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 344 GTAFCGRMLHLLP 382
GT + +H+ P
Sbjct: 93 GTLIRNQHIHVCP 105
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.9 bits (74), Expect = 0.060
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 176 LAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAF 355
L+ ++Q L LF + L + D+ + KG+G +TF + A KA L+G
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 356 CGRMLHLLPAK 388
GR++ + AK
Sbjct: 133 NGRLIFVETAK 143
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 33.9 bits (74), Expect = 0.060
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYT--- 334
+++NL ++++ L LFE +G + +V +P K + YG V + ++A
Sbjct: 37 YIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTE 96
Query: 335 --ELDGTAFCGRMLH 373
E+D +A+ ++H
Sbjct: 97 RYEIDASAYSQPLMH 111
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 33.9 bits (74), Expect = 0.060
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA----VKAY 331
FV L V+E + FE++G T+V + D + +G+G +T+ E +K +
Sbjct: 111 FVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTF 170
Query: 332 TELDG 346
EL+G
Sbjct: 171 HELNG 175
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 33.9 bits (74), Expect = 0.060
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA----VKAY 331
FV L V+E + FE++G T+V + D + +G+G +T+ E +K +
Sbjct: 111 FVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTF 170
Query: 332 TELDG 346
EL+G
Sbjct: 171 HELNG 175
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.9 bits (74), Expect = 0.060
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV +L SE++L +F G +TEV + + +SKG + F E A +A EL
Sbjct: 217 FVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELK 276
Query: 344 GTAFCGR 364
G+
Sbjct: 277 SPMINGK 283
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAV 322
F+ L +E+ + +L + YG L +V L + + + K +G VTF E AV
Sbjct: 394 FIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAV 446
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.5 bits (73), Expect = 0.080
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLF-EKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
FV +L+ V++ L F ++Y + + ID +SKGYG V F +A TE+
Sbjct: 205 FVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEM 264
Query: 341 DGTAFC 358
+G A+C
Sbjct: 265 NG-AYC 269
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.5 bits (73), Expect = 0.080
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV L+ + L F +G + + + +D+ + S+G+G VT+ E A A +
Sbjct: 39 FVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQ 98
Query: 344 GTAFCGRMLHLLPAKS 391
GR++ + PA S
Sbjct: 99 NKELDGRIIGVHPADS 114
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 33.5 bits (73), Expect = 0.080
Identities = 25/103 (24%), Positives = 44/103 (42%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
+V N+ +L ++F+ +G + V + + +S+G G VT A A LD
Sbjct: 111 YVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLD 170
Query: 344 GTAFCGRMLHLLPAKSEKLENESDDEGLSFKEKKAKRLKAQAK 472
GT GR + + + + E L+ KK ++Q K
Sbjct: 171 GTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHK 213
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 32.3 bits (70), Expect = 0.18
Identities = 26/99 (26%), Positives = 40/99 (40%)
Frame = +2
Query: 98 LNIKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQS 277
L+I+ + N V NL +S QEL L + YG + E+ ++ S
Sbjct: 283 LDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIR---RTMHDNS 339
Query: 278 KGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSE 394
+ Y + F A A L+G G+ L L+P E
Sbjct: 340 QIY--IEFFDVRAAAAALGGLNGLEVAGKKLQLVPTYPE 376
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV LA + E F KYG +T+ + D+ Q +G+G VT+
Sbjct: 45 FVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY 90
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTF 301
FV + V + E F ++G L E + D +S+G+G VT+
Sbjct: 133 FVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 178
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 30.7 bits (66), Expect = 0.56
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELD 343
FV N Y + +L LF+KYG +D+V+ +S GY V F A A +LD
Sbjct: 5 FVGNFEYETRQSDLERLFDKYG-------RVDRVDMKS-GYAFVYFEDERDAEDAIRKLD 56
Query: 344 GTAF 355
F
Sbjct: 57 NFPF 60
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.9 bits (64), Expect = 0.98
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPL 235
FVRN+ V + ELT LFE+YG +
Sbjct: 171 FVRNINSNVEDSELTALFEQYGDI 194
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.9 bits (64), Expect = 0.98
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 164 FVRNLAYVVSEQELTNLFEKYGPL 235
FVRN+ V + ELT LFE+YG +
Sbjct: 171 FVRNINSNVEDSELTALFEQYGDI 194
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 29.5 bits (63), Expect = 1.3
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
V NLA VS ++L N+F YG + E+ +K +H+ V F A A L+
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHK-----FVEFFDVRSADAALKALNR 280
Query: 347 TAFCGRMLHL 376
T G+ + L
Sbjct: 281 TEIAGKRIKL 290
>At1g14570.2 68414.m01733 UBX domain-containing protein contains
Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
interaction motif
Length = 468
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 349 STIEFCVSLHGMFRHHESNGAVPF*LMVNFVYWQVY 242
ST EF S H + R +N AV + NF++WQVY
Sbjct: 207 STTEF--SSHMLNRDTWANDAVSQTIKANFIFWQVY 240
>At1g14570.1 68414.m01732 UBX domain-containing protein contains
Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
interaction motif
Length = 468
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 349 STIEFCVSLHGMFRHHESNGAVPF*LMVNFVYWQVY 242
ST EF S H + R +N AV + NF++WQVY
Sbjct: 207 STTEF--SSHMLNRDTWANDAVSQTIKANFIFWQVY 240
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEV 244
VRN+ + +SE +L LF+ +G +T++
Sbjct: 10 VRNVGHEISENDLLQLFQPFGVITKL 35
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 28.3 bits (60), Expect = 3.0
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 233 LTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDGTAFCGRMLHLLPAKSEKL-ENE 409
+TE N P+ H++ V F PE KA +LDG F GR + EK +NE
Sbjct: 322 ITEPNFPV----HEAVRI-FVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNE 376
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 101 NIKKRQEQTNXXXXXXXXXXXFVRNLAYVVSEQELTNLFEKYGPLTEV 244
++KK + FV L Y SE ++ FE YGP+ V
Sbjct: 120 DLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 386 KSEKLENESDDEGLSFKEKKAKRLKAQAK 472
K +KLE E D+ KE+K K KA+ K
Sbjct: 98 KKDKLEKEKKDKERKEKERKEKERKAKEK 126
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKY--GPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTEL 340
++N+ + + L ++Y G + LPID N + GY + + PE+ V Y
Sbjct: 746 IKNIPNKYTSKMLLAAIDEYCKGTYDFLYLPIDFKNKCNVGYAFINLIEPENIVPFYKAF 805
Query: 341 DG 346
+G
Sbjct: 806 NG 807
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 167 VRNLAYVVSEQELTNLFEKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHA--VKAYTEL 340
V+ L+ +E++L + ++GPL V + ++ + S+G+ + F + A + E
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Query: 341 DGTAFCGRML 370
DG GR L
Sbjct: 362 DGIVLDGRKL 371
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 218 EKYGPLTEVNLPIDKVNHQSKGYGTVTFMMPEHAVKAYTELDG 346
+ Y V LP+D N + GYG V PE A + Y G
Sbjct: 451 QPYSSYDFVYLPMDFNNKCNVGYGFVNMTSPEAAWRFYKAFHG 493
>At3g26580.1 68416.m03318 expressed protein
Length = 350
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 377 LPAKSEKLENESDDEGLSFKEKKAKRLKAQ 466
L K+E+L+ + D+EG +EKK R+K +
Sbjct: 130 LERKAEELQYKIDEEGDDSEEKKRMRVKRE 159
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 339 SMVLLSAVGCFIYYQPKVKNLKTKATMKGYH 431
S+ + ++G I+Y+PK K + MK +H
Sbjct: 912 SIAAMLSIGPSIFYRPKDKQVHADNAMKNFH 942
>At2g01980.1 68415.m00133 sodium proton exchanger, putative (NHX7)
(SOS1) identical to putative Na+/H+ antiporter SOS1
[Arabidopsis thaliana] gi|8515714|gb|AAF76139; Member of
The Monovalent Cation:Proton Antiporter (CPA1) Family,
PMID:11500563
Length = 1146
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 321 TACSG-IMKVTVPYPFD*WLTLSIGRFTSVRGP 226
TAC G ++KVT PY +D +L +G S P
Sbjct: 141 TACLGSLVKVTFPYEWDWKTSLLLGGLLSATDP 173
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 242 VNLPIDKVNHQSKGYGTVTFMMPEHAVKAY 331
V LPID N + GYG V PE + Y
Sbjct: 383 VYLPIDFSNKSNVGYGFVNMTSPEAVWRLY 412
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,134,112
Number of Sequences: 28952
Number of extensions: 130877
Number of successful extensions: 613
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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