Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M09
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 113 1e-25
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580... 35 0.038
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 30 1.4
10_01_0108 + 1337009-1338190 29 2.5
03_05_0240 - 22263189-22263815 29 3.3
12_02_0630 + 21367620-21367695,21367890-21367976,21368287-213683... 28 4.4
04_03_0964 - 21290107-21290667,21290780-21291130,21291230-212914... 28 4.4
04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706 27 7.7
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 113 bits (271), Expect = 1e-25
Identities = 67/165 (40%), Positives = 98/165 (59%), Gaps = 3/165 (1%)
Frame = +3
Query: 72 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 242
M++Y+D++TGDE+ SD++ + I+ +++EV GK V++ D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 243 TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMN 422
D VDIV RL E F DKK + ++K Y+K L AKL+ + ++ FK N+
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDAEKQEE---FKKNIE 115
Query: 423 KVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNIHGTDVPFMMF 557
K +L + KDLQFF GESM DG + Y++ TD F+ F
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKD-GATDPTFLYF 159
>03_06_0724 -
35757228-35757323,35757837-35757893,35757983-35758075,
35758271-35758336,35758444-35758653,35758750-35759022,
35759112-35759251,35759330-35759471
Length = 358
Score = 35.1 bits (77), Expect = 0.038
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 138 IDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGD 317
+D ++ + T TV++ DD DG A+ + G + ++ + ++ R E D
Sbjct: 134 VDLILEQTTVGTVVKIADDEE-DGEGNGADGSSTGGNDDLFGLISVLNLGRYSEHRCMKD 192
Query: 318 KKSYTLYL---KDYMKKLVAKLEEKAPD 392
K Y L + KD KKL L +KAPD
Sbjct: 193 LKDYLLAVCGDKDTKKKLKQMLGDKAPD 220
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 223 AEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 92
+EG+N S + CV++ LP S + T+ ENIS PV+
Sbjct: 662 SEGINFSDGMGRCVVMVGLPYPSPSDVELTETIKYIENISKPVL 705
>10_01_0108 + 1337009-1338190
Length = 393
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 66 IKMIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDI 197
I + + + E ++D YK +L+D I E+ K V++ +I
Sbjct: 131 IGLTFIRSIHLSSEAYNDAYKFRLLDSCIDEIGEKNVVQVVSNI 174
>03_05_0240 - 22263189-22263815
Length = 208
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Frame = +3
Query: 75 IIYKDVITGDEMFSDTYKVKLIDEVIY-EVTGKTVIRTQDDIHIDGFNPSAEEADEGTDS 251
+I KDV GDE+ D + V +E+I +V + ++D+ I E E
Sbjct: 77 LIEKDVEVGDEIHKDVFVVDWKEELIEGDVQVGDEKQVEEDVDIGEERHRDVEDGEVEQE 136
Query: 252 NVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEE 380
+ G+D+ N E D++ L+++D + + + EE
Sbjct: 137 MSDDGMDV--NQSDNENTVELDERRLILFIRDLLDEEIYTREE 177
>12_02_0630 +
21367620-21367695,21367890-21367976,21368287-21368333,
21368413-21368470,21369056-21369166,21369353-21369478,
21370123-21370182,21370966-21371186,21371274-21371460,
21371939-21372063
Length = 365
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +3
Query: 66 IKMIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEAD 236
+K+++ + T D++ D +++ +++ ++ +DD+HI G P A+ D
Sbjct: 14 LKLVMMESHATPDDLTGDKGAAQILHRQLFDAHEPNLL-DEDDMHIFGSKPMADPLD 69
>04_03_0964 -
21290107-21290667,21290780-21291130,21291230-21291411,
21291505-21291631,21291956-21292168,21292627-21292755,
21292891-21293616
Length = 762
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 138 IDEVIYEVTGKTVIRTQDDIHIDGFNP 218
+ E ++EVTGK + DD + DG +P
Sbjct: 639 LSETVFEVTGKDKSMSDDDDNTDGADP 665
>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
Length = 187
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 148 LFMKSPARP*SEHKTISTLMDLTPRPRRLTKGRIPTWRL 264
L + +PA P + H+ L+ +PR L R P WRL
Sbjct: 6 LLLANPAAPTARHQ--HRLLQQRRQPRLLASSRPPRWRL 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,450,957
Number of Sequences: 37544
Number of extensions: 312548
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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