Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M09
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)                    29   3.4  
SB_2878| Best HMM Match : rve (HMM E-Value=0.094)                      29   3.4  
SB_25963| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
 Frame = +3

Query: 192 DIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 371
           D ++ G N SAE+A +  +    TG ++V+ +RLVE   +   K      K Y+KK+   
Sbjct: 47  DENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE-IPYKTFKELLAEFKPYIKKVKEH 105

Query: 372 L-EEKAPD-QVDIFKTNMNKVMKDILARFKDLQFFTGESMDCD 494
           + EE  PD +V  F+      +  I   FK+ QFF     DCD
Sbjct: 106 MKEEGCPDEEVKGFEKAAMDYILSIKKNFKEYQFF---QPDCD 145


>SB_21029| Best HMM Match : PX (HMM E-Value=9.1e-15)
          Length = 1466

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 333 LYLKDYMKKLVAKLEEKAPDQVDIF 407
           L L+ Y+ KL+ K E+  PDQ+D F
Sbjct: 826 LLLEIYLHKLLEKFEDNLPDQLDNF 850


>SB_2878| Best HMM Match : rve (HMM E-Value=0.094)
          Length = 291

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 330 YRISYRQMHTFRLACDSGL-CLHQSPRWNPSLRQPPRPRG*IHQCGYRLVF*SR 172
           Y  +Y   + +++  D+      + PR  PS RQPP     IH C +R ++ +R
Sbjct: 78  YAYTYTYTYKYKMIADNCRPASERPPRHCPSRRQPPVGDIAIHYCRHRPIYYAR 131


>SB_25963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/40 (32%), Positives = 28/40 (70%)
 Frame = -3

Query: 184 VLITVLPVTS*ITSSINLTLYVSENISSPVITSL*IIILM 65
           ++IT++ +T+ IT  I++T+ ++  I +  IT + III++
Sbjct: 117 IIITIIIITNTITIIISITIIITIIIITNTITIIFIIIII 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,902,829
Number of Sequences: 59808
Number of extensions: 378084
Number of successful extensions: 1247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)