Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M09
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16640.1 68416.m02127 translationally controlled tumor family... 107 5e-24
At3g05540.1 68416.m00607 translationally controlled tumor family... 91 3e-19
At4g13380.1 68417.m02091 heavy-metal-associated domain-containin... 29 2.8
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 28 4.9
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot... 28 4.9
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot... 28 4.9
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa... 28 4.9
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 27 6.4
At1g69740.1 68414.m08025 porphobilinogen synthase, putative / de... 27 6.4
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 27 6.4
At5g48450.1 68418.m05991 multi-copper oxidase type I family prot... 27 8.5
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote... 27 8.5
At1g66940.2 68414.m07609 protein kinase-related 27 8.5
>At3g16640.1 68416.m02127 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 168
Score = 107 bits (257), Expect = 5e-24
Identities = 66/165 (40%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Frame = +3
Query: 72 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 242
M++Y+D++TGDE+ SD++ K I+ +++EV GK V D++I G NPSAEE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59
Query: 243 TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMN 422
D + + VDIV RL E + DKK + Y+K Y+K L KL E+ DQ +FK +
Sbjct: 60 VDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIE 115
Query: 423 KVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNIHGTDVPFMMF 557
K +L R D QFF GE M D + Y+ T+ F+ F
Sbjct: 116 GATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKE-GSTNPTFLYF 159
>At3g05540.1 68416.m00607 translationally controlled tumor family
protein similar to translationally controlled tumor
protein GB:AAD10032 from [Hevea brasiliensis]
Length = 156
Score = 91.5 bits (217), Expect = 3e-19
Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Frame = +3
Query: 72 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 242
M++Y+D++TGDE+ SD++ K I+ +++EV GK NPS EE DEG
Sbjct: 1 MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGK--------------NPSGEEGGEDEG 46
Query: 243 TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMN 422
D VDI+ RL E +F DKK + +++K Y+K+L KL+ + ++FK ++
Sbjct: 47 VDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIE 102
Query: 423 KVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNIHGTDVPFM 551
K ++++ KD QFF GESM+ + + Y TD F+
Sbjct: 103 SATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYREGATDPTFL 145
>At4g13380.1 68417.m02091 heavy-metal-associated domain-containing
protein low similarity to wound-responsive gene KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF00403: Heavy-metal-associated domain
Length = 195
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +3
Query: 192 DIHIDGFNPSAEEADEGTDSNVETGVDI----VLNHRLVETYAFGDKKSYTLYLKDYMKK 359
+IHI F EAD G + GV V N ++V T F ++K + L++ M+K
Sbjct: 82 EIHI-AFLSEKYEADIGKVISKFEGVKTCKVDVENKKVVITGDFDEEKLWK-ELEEKMRK 139
Query: 360 LVAKLEEKAPDQVDIFKTNMNKVMKDI 440
+ K+E++ D I K N++ + +
Sbjct: 140 RIVKMEKEKKDDEPITKDEENEIDRGV 166
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 99 GDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETG 266
G+ S K +++D V+ +T T + +GF P+AEEAD+G S + G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE-EGFLPTAEEADDGIGSMMMGG 292
>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 27.9 bits (59), Expect = 4.9
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Frame = +3
Query: 192 DIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 371
D+ D N + + T DI+L LVE+ DKK L KK
Sbjct: 104 DLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTYG 163
Query: 372 L------EEKAPDQVDIFKTNMN 422
+ E+ PD +I K M+
Sbjct: 164 VYSDPADPEELPDYYEIIKNPMD 186
>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 579
Score = 27.9 bits (59), Expect = 4.9
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Frame = +3
Query: 192 DIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 371
D+ D N + + T DI+L LVE+ DKK L KK
Sbjct: 104 DLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTYG 163
Query: 372 L------EEKAPDQVDIFKTNMN 422
+ E+ PD +I K M+
Sbjct: 164 VYSDPADPEELPDYYEIIKNPMD 186
>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1055
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/79 (21%), Positives = 35/79 (44%)
Frame = +3
Query: 312 GDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDC 491
G + + Y+ D K A + P ++D T + +D+ + L F+T ++C
Sbjct: 375 GRVQQFVDYIADLESKQTATTVPEFPSKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINC 434
Query: 492 DGMVAMMEYRNIHGTDVPF 548
++ +E+ D+PF
Sbjct: 435 MHVLPDLEFLEKKYKDMPF 453
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 27.5 bits (58), Expect = 6.4
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Frame = +3
Query: 210 FNPSAEEADEG--TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK--KLVAKLE 377
F PS E + G + S +E + + L R+ E FGD+ T D+M+ ++ ++
Sbjct: 546 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMV 605
Query: 378 E-----KAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDCD 494
E K QV + N + ++ KD T + +D +
Sbjct: 606 ERFGFSKKIGQVAVGGAGGNPFLGQSMSSQKDYSMATADVVDAE 649
>At1g69740.1 68414.m08025 porphobilinogen synthase, putative /
delta-aminolevulinic acid dehydratase, putative similar
to delta-aminolevulinic acid dehydratase (Alad)
GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
Spinacia oleracea, SP|P30124 from Pisum sativum
Length = 430
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 309 FGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDILARFKD 458
FGDKK+Y + +Y + L+ E++A + DI DI+ +D
Sbjct: 317 FGDKKTYQMNPANYREALIEAREDEA-EGADILLVKPGLPYLDIIRLLRD 365
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 27.5 bits (58), Expect = 6.4
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Frame = +3
Query: 210 FNPSAEEADEG--TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMK--KLVAKLE 377
F PS E + G + S +E + + L R+ E FGD+ T D+M+ ++ ++
Sbjct: 558 FAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMI 617
Query: 378 E-----KAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDCD 494
E K QV + N M ++ KD T + +D +
Sbjct: 618 ERFGFSKKIGQVAVGGPGGNPFMGQQMSSQKDYSMATADIVDAE 661
>At5g48450.1 68418.m05991 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase; also
similar to l-ascorbate oxidase and pollen-specific
protein
Length = 550
Score = 27.1 bits (57), Expect = 8.5
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 24 SRSFGFIILNRLQSIKMIIYKDVITGD-EMFSDTYKVKLIDEVIYEVTGKTVIRTQDDIH 200
S +G II+N I + + GD +F + K ++ +V K +R D I
Sbjct: 137 SGGYGGIIVNNRAIIPVPFA--LPDGDVTLFISDWYTKSHKKLRKDVESKNGLRPPDGIV 194
Query: 201 IDGFNPSAEEADEGTDSNVETG 266
I+GF P A NVE G
Sbjct: 195 INGFGPFASNGSPFGTINVEPG 216
>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
kinase, putative
Length = 744
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 30 SFGFIILNRLQSIKMIIYKDVITGDEMFSDTYKVKLID-EVIYEV 161
SFG I+L L I + +D++ E ++ +KL+D E+ EV
Sbjct: 660 SFGVILLELLTGIVFSVDRDLVRDSETDEKSWFLKLVDGEIRVEV 704
>At1g66940.2 68414.m07609 protein kinase-related
Length = 309
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 427 TLFMFVLNISTWSGAFSSNFATNFFM*SLRYNV 329
TLF F++++S + +FS+N + FF RY +
Sbjct: 277 TLFSFMISVSQFLCSFSANCFSFFFAPFYRYRI 309
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,379
Number of Sequences: 28952
Number of extensions: 262362
Number of successful extensions: 842
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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