Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M08
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    31   0.072
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    31   0.095
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    26   3.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   4.7  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.3  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 31.5 bits (68), Expect = 0.072
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 9   LGVQLRTDFDSGKELLCTVLKSCGEECVIAVK 104
           LG ++   FD G++L+ TV+ + GEE  +A +
Sbjct: 121 LGNEIEEGFDEGRDLIITVVSAMGEETALACR 152


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 31.1 bits (67), Expect = 0.095
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 9   LGVQLRTDFDSGKELLCTVLKSCGEECVIAVK 104
           LG ++   F+ GK+L+ TV+ + GEE  +A +
Sbjct: 121 LGNEIEEGFEEGKDLIITVVSAMGEEIALACR 152


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 134 LSIYRVIITNL*FFLQSKKKPYYINVKHNMSNLTLKKNIVVGCGRHGLT 280
           L+IY      L F   +    ++  ++ NMS     + IV+G G  GL+
Sbjct: 4   LTIYTWTFRRLPFIPSTNSASFFSTLRFNMSTANNTQAIVIGGGLAGLS 52


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -3

Query: 142  NAELVYLSRAVFALTAITHSSPQDFSTVHSNSLPLSKS--VRSCTP 11
            ++ +V  S  + +LTA+  S+P   S+V ++S P++ S  V + TP
Sbjct: 2558 SSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTP 2603



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 142  NAELVYLSRAVFALTAITHSSPQDFSTVHSNSLPLSKS--VRSCTP 11
            ++ +V  S  + + T +  S+P   STV + S P++ S  V S TP
Sbjct: 2258 SSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTP 2303



 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 142  NAELVYLSRAVFALTAITHSSPQDFSTVHSNSLPLSKS--VRSCTP 11
            ++ +V  S  + + TA+  S+P   STV ++S P++ S  + S TP
Sbjct: 3026 SSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITSSSVLNSSTP 3071


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 100 TAITHSSPQDFSTVHSNSLP 41
           +A+  S P DF +VHS++LP
Sbjct: 214 SALPISPPSDFFSVHSHNLP 233


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 182 SKKKPYYINVKHNM 223
           S KKP+Y++ KHN+
Sbjct: 54  SSKKPWYVDEKHNL 67


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 18  QLRTDFDSGKELLCTVLKSCG 80
           QL+  F    E LCT+L SCG
Sbjct: 522 QLQNGFIPTCERLCTILLSCG 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,605
Number of Sequences: 5004
Number of extensions: 43763
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)