Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M08
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 33 0.17
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 30 0.89
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 30 0.89
01_05_0175 - 18936752-18937621,18938855-18941641 29 1.6
01_01_0875 + 6856440-6857195,6858670-6858918,6859025-6859147,685... 29 1.6
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 28 3.6
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 28 3.6
01_06_0051 + 25988439-25989068,25989445-25989693,25989952-259900... 28 3.6
12_01_0026 + 219663-220843,222201-222447,222574-224535 27 6.3
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 27 6.3
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 27 6.3
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 18 QLRTDFDSGKELLCTVLKSCGEECVIAVK 104
Q++T F GK+L+ TV+ + GEE + A+K
Sbjct: 144 QIKTGFGEGKDLVVTVMSAMGEEQICALK 172
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 18 QLRTDFDSGKELLCTVLKSCGEECVIAVK 104
Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 159 QIKDGFGEGKDLVVTVMSAMGEEQICALK 187
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 18 QLRTDFDSGKELLCTVLKSCGEECVIAVK 104
Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 1462 QIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 259 VRTSRAYSPLCLSPEVQISGNVTRYH*NFANRFHRSPFI 375
+ +RAY CL PEV+ S V R++ A+RF R F+
Sbjct: 441 ITPTRAY---CLPPEVERSNRVLRHYHEVADRFLRVTFM 476
>01_01_0875 +
6856440-6857195,6858670-6858918,6859025-6859147,
6859288-6859479
Length = 439
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 239 KKNIVVGCGRHGLTLH-SVCHLKSK*VETLHGTIETLPIGFIGHRSF 376
KK +VVGCG G+ + +C+ ++ + T+ LP +G +F
Sbjct: 220 KKVLVVGCGNSGMEVSLDLCNHNARASMVVRDTVHVLPREILGFSTF 266
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 166 IIFFTIE-KKTILHKCKT*YV*FNFKKKYSGGVRTSRA 276
++ FT+ K+ ILH K YV F+F K+ G R + A
Sbjct: 208 VVLFTVTMKRQILHMIKYRYVPFSFGKQRYNGKRVASA 245
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 18 QLRTDF-DSGKELLCTVLKSCGEECVIAVK 104
Q++ F + GK+++ TV+ + GEE + AVK
Sbjct: 127 QIKNGFGEEGKDMILTVMSAMGEEQICAVK 156
>01_06_0051 +
25988439-25989068,25989445-25989693,25989952-25990074,
25990246-25990464
Length = 406
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 239 KKNIVVGCGRHGLTLH-SVCHLKSK*VETLHGTIETLPIGFIGHRSF 376
KK +VVGCG G+ + +C +K + T+ LP G +F
Sbjct: 178 KKVLVVGCGNSGMEVSLDLCRHGAKPSMVVRNTVHVLPREMFGLSTF 224
>12_01_0026 + 219663-220843,222201-222447,222574-224535
Length = 1129
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 399 RMHQNCRRNER*PMKPIGKVSMVPCN 322
R+HQ+C+R R P KP + VP +
Sbjct: 501 RLHQDCQRINRDPYKPFPRYIGVPAD 526
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 251 VVGCGRHGLTLHSVCHLKSK*VETLH 328
V+GCGR G + CHL E LH
Sbjct: 532 VIGCGREGSSGGGGCHLSMWMTERLH 557
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 42 GKELLCTVLKSCGEECVIAVKANTALDK 125
G+ L+ +L SC EE + V++ +LDK
Sbjct: 338 GRSLISKILVSCSEEILTLVQSTGSLDK 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,050,736
Number of Sequences: 37544
Number of extensions: 252797
Number of successful extensions: 442
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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