Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M08
         (495 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                31   0.39 
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      28   4.9  
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)               27   8.5  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 18  QLRTDFDSGKELLCTVLKSCGEECVIAVK 104
           ++R  F++ +  + TVLK+ GEE V+ VK
Sbjct: 676 EIRAKFEASENFMVTVLKAMGEETVVGVK 704


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -1

Query: 195  GFFFDCKKNYKFVIITL*MLSWFICRELCLL*LRSHTPHRKISAQC------TVTPCRCQ 34
            G      ++YKF+ I L ML  +    +CL  LRS   ++ I++QC        +  +C 
Sbjct: 831  GICLSMLRSYKFIGICLSMLRSYKFIGICLSMLRS---YKFIASQCLGLIRSLASASQCL 887

Query: 33   SRYAVVRRA 7
            SRY + R A
Sbjct: 888  SRYGIDRSA 896


>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
          Length = 425

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 412 YVCILEVRAIYAFCQRVASSASLTYKR 492
           YV  LE RA++ FC  V  +A + Y R
Sbjct: 67  YVSELEFRAVFVFCSIVVLAAIILYFR 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,918
Number of Sequences: 59808
Number of extensions: 323253
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)