Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M08
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U58755-15|AAB00704.2|  329|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL032618-4|CAB63367.1|  353|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical...    27   9.9  

>Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.1 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 204 M*YGFFFDCKKNYKFVIITL*MLSWFICRELC 109
           M YGF+ +CKK Y   +     L+ F C  LC
Sbjct: 199 MQYGFYLECKKRYSVALYDAFQLA-FNCMPLC 229


>U58755-15|AAB00704.2|  329|Caenorhabditis elegans Hypothetical
           protein C34D4.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 261 HPTTIFFFKVKLDILCFTFM*YGFFFDCKKNYKFVIITL*MLSWFICRELC 109
           HP  +F  +   +      M YGFF +C+K +   +     L+ F C  LC
Sbjct: 128 HPDKVFLLRGNHESRPVN-MQYGFFMECRKRFSNALYDAFQLA-FYCMPLC 176


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 260 CGRHGLTLHSVCHLKSK*VETLHGTIETLPIG 355
           CG +G+T  + C L+ +  E+ + TIE    G
Sbjct: 780 CGTNGVTFTNACSLQKEICESANSTIEVAYTG 811


>AL032618-4|CAB63367.1|  353|Caenorhabditis elegans Hypothetical
           protein Y42A5A.4 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 176 LQSKKKPYYINVKHNMSNLTLKKNIVVGCGRHG 274
           L SK+ P Y+ + +  SN  + KN  +  G HG
Sbjct: 303 LTSKRSPNYLPLLNGNSNNLVSKNFSLQGGNHG 335


>AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical
           protein Y71G12B.30 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 204 M*YGFFFDCKKNYKFVIITL*MLSW-FICRELCLL 103
           M YGF+ +CK+ Y   +       W F C  LC +
Sbjct: 144 MQYGFYNECKRRYSVTLYE--TFQWAFYCMPLCAI 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,721,872
Number of Sequences: 27780
Number of extensions: 243918
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)