Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M08
(495 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 35 0.026
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 31 0.32
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 31 0.56
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 29 1.3
At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RE... 28 3.0
At4g23260.1 68417.m03353 protein kinase family protein contains ... 27 6.9
At5g11320.2 68418.m01322 flavin-containing monooxygenase family ... 27 9.2
At5g11320.1 68418.m01321 flavin-containing monooxygenase family ... 27 9.2
At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RE... 27 9.2
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 35.1 bits (77), Expect = 0.026
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 9 LGVQLRTDFDSGKELLCTVLKSCGEECVIAVK 104
L Q+R FD GK+++ +V+ S GEE + AVK
Sbjct: 122 LTAQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 31.5 bits (68), Expect = 0.32
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 18 QLRTDFDSGKELLCTVLKSCGEECVIAVK 104
Q+++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 125 QIKSGFDDGKDLVVSVMSAMGEEQINALK 153
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 30.7 bits (66), Expect = 0.56
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 VRTSRAYSPLCLSPEVQISGNVTRYH*NFANRFHRSPFIPATV-LMHSIILDY 414
+ +RAY CL PEV++S V R + A RF R F+ ++ ++S +L Y
Sbjct: 416 ITPTRAY---CLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSY 465
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 18 QLRTDFDSGKELLCTVLKSCGEECVIAVK 104
QL+ F+ GK+++ +V+ + GEE + A+K
Sbjct: 125 QLKNGFEEGKDIVVSVMSAMGEEQMCALK 153
>At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RER1C
protein (AtRER1C) {Arabidopsis thaliana}
Length = 211
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 163 LIIFFTIEKKTILHKCKT*YV*FNFKKKY 249
+++FF +K I H K YV F+F KKY
Sbjct: 172 VMLFFLTMRKQIQHMIKYRYVPFSFGKKY 200
>At4g23260.1 68417.m03353 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 579
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 FLQSKKKPYYI--NVKHNMSNLTLKKNIVVGCGRHGLTLHSVCHLK 304
F+ +K Y++ K N + T+++NI+ G R L LH LK
Sbjct: 334 FVSNKSLDYFLFDPTKRNQLDWTMRRNIIGGITRGILYLHQDSRLK 379
>At5g11320.2 68418.m01322 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenases YUCCA [gi:16555352],
YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
Arabidopsis thaliana
Length = 357
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 239 KKNIVVGCGRHGLTLH-SVCHLKSK*VETLHGTIETLPIGFIGHRSF 376
+K +VVGCG G+ + +C + + ++ LP F G +F
Sbjct: 177 RKVLVVGCGNSGMEVSLDLCRYNALPHMVVRNSVHVLPRDFFGLSTF 223
>At5g11320.1 68418.m01321 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenases YUCCA [gi:16555352],
YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
Arabidopsis thaliana
Length = 411
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 239 KKNIVVGCGRHGLTLH-SVCHLKSK*VETLHGTIETLPIGFIGHRSF 376
+K +VVGCG G+ + +C + + ++ LP F G +F
Sbjct: 177 RKVLVVGCGNSGMEVSLDLCRYNALPHMVVRNSVHVLPRDFFGLSTF 223
>At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RER1C
protein (AtRER1C) {Arabidopsis thaliana}
Length = 212
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 163 LIIFFTIEKKTILHKCKT*YV*FNFKKKYSG 255
+++FF +K I H K YV F+F KK G
Sbjct: 172 VMLFFLTMRKQIQHMIKYRYVPFSFGKKQYG 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,762,367
Number of Sequences: 28952
Number of extensions: 217334
Number of successful extensions: 423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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