Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M07
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    26   1.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   1.4  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   1.9  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   1.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   2.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   3.3  
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    24   4.4  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    24   4.4  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    24   5.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    24   5.8  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    23   7.7  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    23   7.7  

>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 76  LRETLQASNLKIKQRKHEIIPRVLKGVPKK--STITFP*IENRTRVLEVKVP 225
           L E  + SNL +K  +++++  + K +PKK  + I    +    R L V++P
Sbjct: 71  LTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIAGNSVHADVRFLSVEMP 122


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 234 NSEWNFYFQNSSAIFDLWKC 175
           N +WNF+  N+SAI    KC
Sbjct: 491 NFDWNFFNYNNSAIDSYAKC 510


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 72  FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNI 179
           FF+    S ELE K  +    +S++E S E I D+I
Sbjct: 183 FFREALNSAELEWKRVQQDQLTSASERSIENIADDI 218


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 66  NPFFKRNATSVELEDKTEKTRNN 134
           NP FKR  T  ++ D++ K R+N
Sbjct: 620 NPHFKRTKTVEKIMDESRKRRSN 642


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 54  RQHPNPFFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYD 173
           +  P P  +R   +V+  + +++TR  +SS E +T + ++
Sbjct: 464 KAQPAPEKRRGEPAVQTRNHSKRTRTATSSVEETTPRAFN 503


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 189 DLWKCYRRFFRYS 151
           DLWK  +RFFR+S
Sbjct: 2   DLWKKGKRFFRFS 14


>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 73  FLRETLQASNLKIKQRKHEIIPR-VLKGVPKKSTITFP*IENRTRVLEVKVPFRVQTATK 249
           F  ET Q S+L +    HE++P+ +L    +K  +      +R ++ E ++P R+Q A  
Sbjct: 125 FTIETFQESDLIVNITHHELVPKHILLSPDEKKELL-----DRYKLRETQLP-RIQLADP 178

Query: 250 SKMRNMMKPSYIVK 291
                 +K   +VK
Sbjct: 179 VARYLGLKRGEVVK 192


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  PNPFFKRNATSVELEDKTEKTRN 131
           PNP +K+N +S+   + T   RN
Sbjct: 197 PNPSYKKNDSSISKAEPTSLFRN 219


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 114 TEKTRNNSSSTEGSTEKIYDN 176
           TEKT +NSS TE     + +N
Sbjct: 799 TEKTPSNSSDTEDDVGDVVEN 819


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 90  TSVELEDKTEKTRNNSSSTEGSTEK 164
           T  E+E+ TE  +NNS+  +   EK
Sbjct: 500 TRSEMEEATEILKNNSADLKAQLEK 524


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 45  YKVRQHPNPFFKRNATSVELEDKTEK 122
           Y+ +  P   FKR    +E+E KTE+
Sbjct: 34  YRGKNGPACLFKRVENVIEMEPKTEQ 59


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 234 NSEWNFYFQNSSAIFDL-WKCYRRFFRYSLQYSRNYFVFSL 115
           NS+    F   +A+ +L WK  +    YS Q    +FV+ L
Sbjct: 202 NSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQDGHEFFVYLL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 995,954
Number of Sequences: 5004
Number of extensions: 16575
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)