Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M07
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0365 + 28767538-28767696,28768299-28768520,28768630-287688...    27   2.9  
10_01_0164 + 1863890-1866253                                           26   6.7  
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    26   6.7  
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601...    25   8.9  

>01_06_0365 +
           28767538-28767696,28768299-28768520,28768630-28768868,
           28769499-28770024,28770115-28770388,28770495-28771134,
           28771220-28771448,28771682-28771948,28772031-28772294,
           28772700-28773344
          Length = 1154

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 257 IFDFVAV*TLNGTFTSKTRVRFSIYGNVIVDFFGT 153
           IF F  V  L    + KT V +S  GNV+    G+
Sbjct: 90  IFSFALVSRLRAQISGKTHVSYSYAGNVVEQTIGS 124


>10_01_0164 + 1863890-1866253
          Length = 787

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 225 WNFYFQNSSAIFDLWKCYRRF 163
           W  ++ N  +++ LW CY  F
Sbjct: 603 WTLHYWNDGSVWKLWFCYMVF 623


>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -3

Query: 254 FDFVAV*TLNGTFTSKTRVRFSIYGNVI--VDFFGTP--FSTRGIISCFLCFIFKFDACS 87
           FD VA+      ++      F I  +VI  + +FG P  F    ++  + CF +K++  +
Sbjct: 158 FDEVAIGIGEQVYSILLLTIFFIEVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFA 217

Query: 86  VSLKKRV 66
           VSL +R+
Sbjct: 218 VSLNERL 224


>09_04_0529 +
           18356964-18358307,18359829-18359944,18360036-18360133,
           18360234-18360418
          Length = 580

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 243 CCLNSEWNFYFQNSSAIFDLWKCYRR 166
           CCL  E +FY + +  +FD    YRR
Sbjct: 283 CCLIPEEDFYLRGAGGLFDF--LYRR 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,615,686
Number of Sequences: 37544
Number of extensions: 81816
Number of successful extensions: 233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)