Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M07
         (307 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)                   27   2.3  
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     26   5.3  
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)                   26   7.0  
SB_59190| Best HMM Match : rve (HMM E-Value=6e-18)                     25   9.2  
SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17)                 25   9.2  
SB_28788| Best HMM Match : RVP (HMM E-Value=0.028)                     25   9.2  
SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)               25   9.2  
SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                  25   9.2  
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)                  25   9.2  
SB_860| Best HMM Match : RVP (HMM E-Value=0.018)                       25   9.2  
SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)                   25   9.2  
SB_46473| Best HMM Match : RVP (HMM E-Value=0.029)                     25   9.2  
SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17)                 25   9.2  
SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                 25   9.2  
SB_26872| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_13078| Best HMM Match : RVP (HMM E-Value=0.039)                     25   9.2  
SB_8937| Best HMM Match : RVP (HMM E-Value=0.029)                      25   9.2  
SB_4291| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.2  

>SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 203 RVRFSIYGNVIVDFFGTPFS 144
           R ++ IYGN++ DFF T F+
Sbjct: 480 REKYGIYGNLLEDFFATMFA 499


>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
          Length = 1003

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = +1

Query: 67  TLFLRETLQASNLKIKQRKHEIIPRVLKGVPKKSTITFP*IENRTRVLEVKVPFRVQTAT 246
           TL    + Q SN+++ + + +    +      K       + N+      K+P  +   T
Sbjct: 150 TLLDSPSAQTSNIELSREQSKSTTTLTSDPVLKRLPLIASVTNQECYPTKKIPVSMLDPT 209

Query: 247 KSKMRNMMKPSYIVKNQSH 303
           + K+R M +   IVK + H
Sbjct: 210 QQKLREMEEDGIIVKEEEH 228


>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 108 DKTEKTRNNSSSTEGSTEKIY 170
           D+T K +N++SST GS + +Y
Sbjct: 254 DRTRKRKNSTSSTGGSKKTLY 274


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 60  HPNPFFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNIS 182
           +PN   K    + EL    EK +  S S++G TEK + ++S
Sbjct: 770 NPNARSKYFLIAPELARLAEKAKEMSGSSKGKTEKHHHDLS 810


>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 54   RQHPNPFFKRNATSVELEDKTEKTRNNSSSTEGSTEKI 167
            + H NP   ++ +    +DK +KTR   +S E +TE +
Sbjct: 1050 KDHGNPI--KSESEASDDDKEDKTRGELASDEENTESL 1085


>SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)
          Length = 890

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 164 KIPISMLDPTQQKLREMEEDGIIVKEEEH 192


>SB_59190| Best HMM Match : rve (HMM E-Value=6e-18)
          Length = 660

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 216 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 244


>SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17)
          Length = 635

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 164 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 192


>SB_28788| Best HMM Match : RVP (HMM E-Value=0.028)
          Length = 278

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 216 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 244


>SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
          Length = 557

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 437 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 465


>SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 216 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 244


>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 1432

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 332 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 360


>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
          Length = 609

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 354 KIPVSMLDPTQQKLREMEEDEIIVKEEEH 382


>SB_860| Best HMM Match : RVP (HMM E-Value=0.018)
          Length = 260

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 198 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 226


>SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)
          Length = 800

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 164 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 192


>SB_46473| Best HMM Match : RVP (HMM E-Value=0.029)
          Length = 304

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 216 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 244


>SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17)
          Length = 429

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 70  KIPVSMLDPTQQKLREMEEDGIIVKEEEH 98


>SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 649

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 388 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 416


>SB_26872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 63  PNPFFKRNATSVELEDKTEKTRNNSS 140
           P P+ KRNA   E E K ++ R N++
Sbjct: 57  PRPYVKRNAKYWEEEIKIKRRRGNTN 82


>SB_13078| Best HMM Match : RVP (HMM E-Value=0.039)
          Length = 251

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 216 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 244


>SB_8937| Best HMM Match : RVP (HMM E-Value=0.029)
          Length = 303

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 216 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 244


>SB_4291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 KVPFRVQTATKSKMRNMMKPSYIVKNQSH 303
           K+P  +   T+ K+R M +   IVK + H
Sbjct: 112 KIPVSMLDPTQQKLREMEEDGIIVKEEEH 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,825,926
Number of Sequences: 59808
Number of extensions: 108641
Number of successful extensions: 398
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)