Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M07
(307 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ644022-1|ABG35128.1| 456|Homo sapiens 5-HT3 receptor subunit ... 31 0.66
BC101185-1|AAI01186.1| 374|Homo sapiens HTR3E protein protein. 31 0.66
BC101183-1|AAI01184.1| 471|Homo sapiens 5-hydroxytryptamine (se... 31 0.66
BC101182-1|AAI01183.1| 471|Homo sapiens 5-hydroxytryptamine (se... 31 0.66
AY349353-1|AAQ93477.1| 456|Homo sapiens 5-HT3c1 serotonin recep... 31 0.66
AY349352-1|AAQ93476.1| 441|Homo sapiens 5-HT3c1 serotonin recep... 31 0.66
AY159813-1|AAO38167.2| 471|Homo sapiens 5-hydroxytryptamine ser... 31 0.66
BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine (se... 30 1.2
AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine rec... 30 1.2
BX897730-1|CAM26290.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
BX322644-1|CAI18447.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
BX088647-1|CAM26282.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
BX005441-1|CAM26234.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
BT006675-1|AAP35321.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
BC017017-1|AAH17017.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
AL671859-7|CAI17583.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
AL669914-7|CAI18183.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
AK222729-1|BAD96449.1| 425|Homo sapiens tripartite motif protei... 29 3.5
AF230386-1|AAG50165.1| 425|Homo sapiens tripartite motif protei... 29 3.5
AB202083-1|BAE78603.1| 425|Homo sapiens tripartite motif-contai... 29 3.5
>DQ644022-1|ABG35128.1| 456|Homo sapiens 5-HT3 receptor subunit E
splice variant HTR3Ea protein.
Length = 456
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + ++K VW +TD
Sbjct: 164 LDIFYFPFDQQNCTLTFSSFLYTVDSMLLDMEKEVWEITD 203
>BC101185-1|AAI01186.1| 374|Homo sapiens HTR3E protein protein.
Length = 374
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + ++K VW +TD
Sbjct: 93 LDIFYFPFDQQNCTLTFSSFLYTVDSMLLDMEKEVWEITD 132
>BC101183-1|AAI01184.1| 471|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member E protein.
Length = 471
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + ++K VW +TD
Sbjct: 179 LDIFYFPFDQQNCTLTFSSFLYTVDSMLLDMEKEVWEITD 218
>BC101182-1|AAI01183.1| 471|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member E protein.
Length = 471
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + ++K VW +TD
Sbjct: 179 LDIFYFPFDQQNCTLTFSSFLYTVDSMLLDMEKEVWEITD 218
>AY349353-1|AAQ93477.1| 456|Homo sapiens 5-HT3c1 serotonin
receptor-like protein protein.
Length = 456
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + ++K VW +TD
Sbjct: 164 LDIFYFPFDQQNCTLTFSSFLYTVDSMLLDMEKEVWEITD 203
>AY349352-1|AAQ93476.1| 441|Homo sapiens 5-HT3c1 serotonin
receptor-like protein protein.
Length = 441
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + ++K VW +TD
Sbjct: 149 LDIFYFPFDQQNCTLTFSSFLYTVDSMLLDMEKEVWEITD 188
>AY159813-1|AAO38167.2| 471|Homo sapiens 5-hydroxytryptamine
serotonin receptor 3E protein.
Length = 471
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + ++K VW +TD
Sbjct: 179 LDIFYFPFDQQNCTLTFSSFLYTVDSMLLDMEKEVWEITD 218
>BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member C protein.
Length = 447
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + + K VW +TD
Sbjct: 164 LDIFYFPFDQQNCTFTFSSFLYTVDSMLLGMDKEVWEITD 203
>AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine
receptor 3 subunit C protein.
Length = 447
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 170 VDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRVWVLTD 51
+D F PF + F F++ D+ + + K VW +TD
Sbjct: 164 LDIFYFPFDQQNCTFTFSSFLYTVDSMLLGMDKEVWEITD 203
>BX897730-1|CAM26290.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>BX322644-1|CAI18447.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>BX088647-1|CAM26282.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>BX005441-1|CAM26234.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>BT006675-1|AAP35321.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>BC017017-1|AAH17017.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>AL671859-7|CAI17583.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>AL669914-7|CAI18183.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>AK222729-1|BAD96449.1| 425|Homo sapiens tripartite motif protein
31 isoform alpha variant protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>AF230386-1|AAG50165.1| 425|Homo sapiens tripartite motif protein
TRIM31 alpha protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
>AB202083-1|BAE78603.1| 425|Homo sapiens tripartite
motif-containing 31 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISIDRK 194
F +ELE K + ++ S GS +K D + DRK
Sbjct: 262 FLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRK 302
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,099,911
Number of Sequences: 237096
Number of extensions: 452955
Number of successful extensions: 1260
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -