Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M07
(307 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73424-5|CAA97782.3| 506|Caenorhabditis elegans Hypothetical pr... 26 4.5
AF067936-3|AAC19216.2| 922|Caenorhabditis elegans Hypothetical ... 26 4.5
AF016664-9|AAB66065.2| 320|Caenorhabditis elegans Serpentine re... 26 6.0
Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical p... 25 7.9
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 25 7.9
U41022-2|AAA82339.2| 373|Caenorhabditis elegans Hypothetical pr... 25 7.9
AJ345015-1|CAC87812.1| 577|Caenorhabditis elegans FEH-1 protein... 25 7.9
AC025723-11|AAN84832.2| 554|Caenorhabditis elegans Mammalian fe... 25 7.9
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 25 7.9
AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe6... 25 7.9
>Z73424-5|CAA97782.3| 506|Caenorhabditis elegans Hypothetical
protein C44B9.5 protein.
Length = 506
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 72 FFKRNATSVELEDKTEKTRNNSSSTEGSTEKIYDNISI 185
FF++N + D + R+NSSS + Y N SI
Sbjct: 222 FFEKNPSKTSNRDSKIENRSNSSSIMYNDPSAYSNDSI 259
>AF067936-3|AAC19216.2| 922|Caenorhabditis elegans Hypothetical
protein C24G6.3 protein.
Length = 922
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 197 RFSIYGNVIVDFFGTPFSTRGIISCFLCFIFKFDAC 90
R+++ N IVD G+ S+ IS +C++ + C
Sbjct: 538 RWNLLKNKIVDELGSTISSSTEISYLICYVQMMEKC 573
>AF016664-9|AAB66065.2| 320|Caenorhabditis elegans Serpentine
receptor, class i protein71 protein.
Length = 320
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 207 NSSAIFDLWKCYRRFFRYSLQYSRNYFVFSLF 112
N ++F + YRR F +SL+ SR V S+F
Sbjct: 289 NMLSLFIFFPPYRRLFGWSLKKSRTKRVSSMF 320
>Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical
protein Y49E10.17 protein.
Length = 524
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 54 RQHPNPFFKRNATSVELEDKTEKTRNNSSSTEGST-EKIYDNIS 182
RQ N F+ + +S + ++ N SSS+ GST + NIS
Sbjct: 102 RQPSNGSFRSSGSSNGSSSSSRRSSNGSSSSSGSTSDNSSSNIS 145
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 48 KVRQHPNPFFKRNATSVELEDK---TEKTRNNSSSTEGSTEKIYDNISIDRK 194
KV P P + ++ S E ++ +E T + STE STEK D+K
Sbjct: 257 KVTTTPEPSTEESSESPETSEEPQSSESTPTSEESTEQSTEKPKKEDKKDKK 308
>U41022-2|AAA82339.2| 373|Caenorhabditis elegans Hypothetical
protein K08B5.1 protein.
Length = 373
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 96 VELEDKTEKTRNNSSSTEGSTEKIYDNISID 188
V++ ++ + SSS++GST +I+ N ID
Sbjct: 332 VKIHTTDSRSSSESSSSDGSTGRIHWNSKID 362
>AJ345015-1|CAC87812.1| 577|Caenorhabditis elegans FEH-1 protein
protein.
Length = 577
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/60 (21%), Positives = 29/60 (48%)
Frame = -3
Query: 245 VAV*TLNGTFTSKTRVRFSIYGNVIVDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRV 66
+A+ +NG ++ RVR+ + + D F + F+C++F + + ++ K V
Sbjct: 454 IAIVEVNGQQIAECRVRYLSFLGIGRDVKHCAFIMQTSSESFMCYVFHVEPNAAAMAKMV 513
>AC025723-11|AAN84832.2| 554|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform c protein.
Length = 554
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/60 (21%), Positives = 29/60 (48%)
Frame = -3
Query: 245 VAV*TLNGTFTSKTRVRFSIYGNVIVDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRV 66
+A+ +NG ++ RVR+ + + D F + F+C++F + + ++ K V
Sbjct: 431 IAIVEVNGQQIAECRVRYLSFLGIGRDVKHCAFIMQTSSESFMCYVFHVEPNAAAMAKMV 490
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/60 (21%), Positives = 29/60 (48%)
Frame = -3
Query: 245 VAV*TLNGTFTSKTRVRFSIYGNVIVDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRV 66
+A+ +NG ++ RVR+ + + D F + F+C++F + + ++ K V
Sbjct: 593 IAIVEVNGQQIAECRVRYLSFLGIGRDVKHCAFIMQTSSESFMCYVFHVEPNAAAMAKMV 652
>AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform b protein.
Length = 640
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/60 (21%), Positives = 29/60 (48%)
Frame = -3
Query: 245 VAV*TLNGTFTSKTRVRFSIYGNVIVDFFGTPFSTRGIISCFLCFIFKFDACSVSLKKRV 66
+A+ +NG ++ RVR+ + + D F + F+C++F + + ++ K V
Sbjct: 542 IAIVEVNGQQIAECRVRYLSFLGIGRDVKHCAFIMQTSSESFMCYVFHVEPNAAAMAKMV 601
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,359,862
Number of Sequences: 27780
Number of extensions: 89523
Number of successful extensions: 405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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