Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M07
         (307 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23260.2 68418.m02722 MADS-box protein, putative                    25   7.6  
At2g03610.1 68415.m00321 F-box family protein contains F-box dom...    25   7.6  

>At5g23260.2 68418.m02722 MADS-box protein, putative 
          Length = 252

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 76  LRETLQASNLKIKQRKHEIIPRVLKGVPKK 165
           L   L+ S LK+++RK+E++ + L+ + +K
Sbjct: 126 LERQLEHSVLKVRERKNELMQQQLENLSRK 155


>At2g03610.1 68415.m00321 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 216

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 234 NSEWNFYFQNSSAIFDLWKCYRRFFRYSLQYSRNYFVFS 118
           +S+WN   QNS +IFD+     + + Y+L +    + FS
Sbjct: 63  DSKWN---QNSGSIFDMAYKNSKLYLYTLDHHIKIYDFS 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,934,967
Number of Sequences: 28952
Number of extensions: 77099
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)