Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M06
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...   167   8e-43
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    32   0.043
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    29   0.40 
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    28   0.92 
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    27   1.6  
SPBC16A3.16 |||mitochondrial inner membrane protein involved in ...    25   4.9  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   4.9  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   4.9  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   8.5  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    25   8.5  

>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score =  167 bits (406), Expect = 8e-43
 Identities = 77/155 (49%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
 Frame = +1

Query: 40  MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIYNKERRNEKIQ 219
           MPQNEYIE   + +GRR D+                      RGIKAK+Y ++RR EKIQ
Sbjct: 1   MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60

Query: 220 MKKKIKAHEEKNVKQN-TEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 396
           MKK IK HEE+N  Q  ++  ++GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61  MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120

Query: 397 IPKVRAQADAEVFKVLQSGKTKRKAWKRMVTKVTY 501
           +P+VR  A+ E+FKV+++GK+K+ +WKRM+TK T+
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATF 155


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 32.3 bits (70), Expect = 0.043
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 426 SVSLCSDLW-YWYIPFTGFLFTFLFNHIRQDFGTRLDISVK*VDRQSPFGDLFSVLFDI 253
           S ++C  LW + Y PFT FL   +F+H+ +D     DI VK VDR       F  + DI
Sbjct: 497 SKNICY-LWLFLYCPFTPFLT--VFSHLLEDDDLDADICVKDVDRLYSIHAFFLKMKDI 552


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 22/84 (26%), Positives = 46/84 (54%)
 Frame = +1

Query: 196 ERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 375
           E+ + K+++ ++     +K +++ TEK+ +  +     +R VQS  +   +M +QK +E 
Sbjct: 82  EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140

Query: 376 AGKWDVPIPKVRAQADAEVFKVLQ 447
             K+     KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +1

Query: 184 IYNKERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLD-------RDVQSRAKVL 342
           +Y+ +++    +  KK+KAH++K   +  E  +E A  V   D       +DV++ A   
Sbjct: 48  VYHVQQKKASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAA 107

Query: 343 SNMIKQKRKEKAGK 384
           +   K+K+ +K  K
Sbjct: 108 AAAKKKKKNKKKVK 121


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 265 NTEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 399
           N  K SE    +  +++D+  R+ +LSN+ K        K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189


>SPBC16A3.16 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Pet191
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 196 ERRNEKIQMKKKIKAHEEKNVKQNTEKVS 282
           E + + + M K+ +   EKN  Q+TEK S
Sbjct: 52  ECKRQMLDMTKRYRIAPEKNTDQDTEKPS 80


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 181 KIYNKERR-NEKIQMKKKIKAHEEKNVKQNTEKVSEGALPV 300
           K+ N E + NE  + + +  ++ E+N  +NTE+++E + P+
Sbjct: 93  KLENFENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 40  MPQNEYIERHQKL 78
           +PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = +2

Query: 371 RKPVNGMYQYQRSEHKLTLKYSKCYSLVKQRGKLGNAW 484
           R PVN  Y +     ++   Y   + L    G+L   W
Sbjct: 356 RFPVNSFYDWHNGATQVKWNYKNPHILASSHGRLVRIW 393


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
 Frame = +1

Query: 175 KAKIYNKERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLL----DRDVQSRAKVL 342
           ++K ++K+ ++ + + +KK++   E+  K+  +K+S   LP   L    D+D  S +   
Sbjct: 16  RSKKFDKKSQSLE-EHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKHSVSNPP 74

Query: 343 SNMIKQKRKE 372
              +K KR++
Sbjct: 75  HKTLKSKRQK 84


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 289 ALPVYLLDRDVQSRAKVLSNMIKQKRKE 372
           +LP + +  D+ S   V  N+IK+K  E
Sbjct: 249 SLPAFKIQEDIPSEKIVCYNVIKEKSNE 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,329
Number of Sequences: 5004
Number of extensions: 37006
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)