Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M06
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.34 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.34 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.6  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   9.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.6  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 187 YNKERRNEKIQMKKKIKAHEEKNVKQNT 270
           Y K+RR EK+  +K+    E  N K+N+
Sbjct: 12  YRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 187 YNKERRNEKIQMKKKIKAHEEKNVKQNT 270
           Y K+RR EK+  +K+    E  N K+N+
Sbjct: 12  YRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   TRVGVSRPLSNHNAAE 50
           T +GVS+P  +HNA E
Sbjct: 193 TAMGVSKPTRDHNAFE 208


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 371 SLRFCLIILDKTLARDWTSLSS 306
           +L+ CL+ L+KT  RD   L+S
Sbjct: 434 TLQRCLLSLEKTYERDTCLLAS 455


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 371 SLRFCLIILDKTLARDWTSLSS 306
           +L+ CL+ L+KT  RD   L+S
Sbjct: 472 TLQRCLLSLEKTYERDTCLLAS 493


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 199 VPYCRSWL*YLVVYEPSQPSY 137
           VPY R W    ++Y  + P Y
Sbjct: 82  VPYNRVWRPDTILYNNADPQY 102


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 5/24 (20%), Positives = 14/24 (58%)
 Frame = -3

Query: 426 SVSLCSDLWYWYIPFTGFLFTFLF 355
           S  +C  +W +++P    ++++ F
Sbjct: 215 SYLVCYGIWVYFVPLFLIIYSYWF 238


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 5/24 (20%), Positives = 14/24 (58%)
 Frame = -3

Query: 426 SVSLCSDLWYWYIPFTGFLFTFLF 355
           S  +C  +W +++P    ++++ F
Sbjct: 91  SYLVCYGIWVYFVPLFLIIYSYWF 114


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 402 WYWYIPFT 379
           W+W  PFT
Sbjct: 179 WFWVTPFT 186


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 211 KIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKV 339
           K ++ K ++  EE+++  ++     G   +YL   D   RAK+
Sbjct: 40  KEELTKLVQGFEEQDILTSSGVTLAGNRYIYLSGTDRVIRAKL 82


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 402 WYWYIPFT 379
           W+W  PFT
Sbjct: 179 WFWVTPFT 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,326
Number of Sequences: 438
Number of extensions: 2551
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)