Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M06
(503 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06360.1 68418.m00712 ribosomal protein S8e family protein co... 155 1e-38
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 31 0.58
At3g59140.1 68416.m06593 ABC transporter family protein putative... 31 0.58
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 30 1.0
At1g65710.1 68414.m07458 expressed protein ; expression supporte... 30 1.0
At3g28770.1 68416.m03591 expressed protein 29 1.8
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 29 2.4
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 29 2.4
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 29 2.4
At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb... 29 2.4
At5g25410.1 68418.m03014 expressed protein contains Pfam profil... 28 3.1
At4g01560.1 68417.m00202 brix domain-containing protein contains... 28 3.1
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 28 3.1
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 28 3.1
At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631... 28 4.1
At2g41460.1 68415.m05122 apurinic endonuclease-redox protein / D... 28 4.1
At1g01670.1 68414.m00085 U-box domain-containing protein 28 4.1
At5g60380.1 68418.m07572 hypothetical protein many predicted pro... 27 5.4
At5g25890.1 68418.m03073 auxin-responsive protein / indoleacetic... 27 7.2
At1g41820.1 68414.m04825 hypothetical protein 27 7.2
At1g17070.1 68414.m02077 D111/G-patch domain-containing protein ... 27 7.2
At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ... 27 9.5
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ... 27 9.5
At2g16300.1 68415.m01866 F-box family protein contains Pfam:PF00... 27 9.5
At1g71760.1 68414.m08294 hypothetical protein 27 9.5
>At5g06360.1 68418.m00712 ribosomal protein S8e family protein
contains Pfam profile PF01201: Ribosomal protein S8e
Length = 260
Score = 155 bits (377), Expect = 1e-38
Identities = 78/155 (50%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Frame = +1
Query: 40 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIYNKERRNEKIQ 219
MPQ +YI+ H+K G RLD+ GIK K+ K+ EK
Sbjct: 1 MPQGDYIDLHRKRNGYRLDHFERKRKKEAREVHKHSTMAQKSLGIKGKMIAKKNYAEKAL 60
Query: 220 MKKKIKAHEEKNVKQNT-EKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 396
MKK +K HEE + ++ E V EGA+P YLLDR+ +RAKVLSN IKQKRKEKAGKW+VP
Sbjct: 61 MKKTLKMHEESSSRRKADENVQEGAVPAYLLDREDTTRAKVLSNTIKQKRKEKAGKWEVP 120
Query: 397 IPKVRAQADAEVFKVLQSGKTKRKAWKRMVTKVTY 501
+PKVR A+ E+F+V++SGK K K WKRMVTK T+
Sbjct: 121 LPKVRPVAEDEMFRVIRSGKRKTKQWKRMVTKATF 155
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 30.7 bits (66), Expect = 0.58
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +1
Query: 217 QMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 372
++KKK + E+K TE+ + +PVY ++ V ++ K+ N ++K K+
Sbjct: 632 ELKKKEQEEEKKTEMGLTEEDEDVLVPVYKEEKVVTAKEKIQENKQEEKYKD 683
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 30.7 bits (66), Expect = 0.58
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 232 IKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKVL--SNMIKQKRKEK 375
+ AH E + V PV ++R + S++KVL S +IKQ+ +EK
Sbjct: 823 VNAHRETAGSERVVAVENPTKPVKEINRVISSQSKVLKPSRLIKQEEREK 872
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 334 KVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLQSG 453
+VL + ++ K KE+ W+ +P ++++ D EV KVL+ G
Sbjct: 386 RVLGSFMRGKGKEE---WEFSLPTLKSRLDGEVEKVLKVG 422
>At1g65710.1 68414.m07458 expressed protein ; expression supported
by MPSS
Length = 455
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 175 KAKIYNKERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPV 300
K++ N+E E++ + K ++HEE++ K ++K S + PV
Sbjct: 40 KSEKLNQEEEEEEVVVIKHTRSHEERSKKTESDKDSPVSSPV 81
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +1
Query: 175 KAKIYNKERRNEKIQMKKK---IKAHEEKNVKQNTE 273
K ++ KE+++ K Q KKK +K EEK +K+N E
Sbjct: 1175 KNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNEE 1210
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 28.7 bits (61), Expect = 2.4
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +1
Query: 196 ERRNEKIQMKKKIKAHEE-------KNVKQNTEKVSEGALPVYLLDRDVQSRAKVLSNMI 354
E + EK + KKKIKA +E K+ NTE SE P Y+ R + A ++
Sbjct: 97 EGKTEKRE-KKKIKAEDETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLA 155
Query: 355 KQKRKEKAGK 384
++ R+EK K
Sbjct: 156 ERARREKISK 165
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 28.7 bits (61), Expect = 2.4
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +1
Query: 196 ERRNEKIQMKKKIKAHEE-------KNVKQNTEKVSEGALPVYLLDRDVQSRAKVLSNMI 354
E + EK + KKKIKA +E K+ NTE SE P Y+ R + A ++
Sbjct: 97 EGKTEKRE-KKKIKAEDETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLA 155
Query: 355 KQKRKEKAGK 384
++ R+EK K
Sbjct: 156 ERARREKISK 165
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 169 GIKAKIYNKERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPV-YLLDRDVQSRAKVLS 345
G+K K + +R+ K KK+ E + K N +K S PV ++ + S V
Sbjct: 546 GVKGKSGSLDRKKAKDSAKKRPTREERERNKSNGKKSSYADQPVSFVSSGIIDSEIAVAK 605
Query: 346 NMIKQKRKEKA 378
+++ KE A
Sbjct: 606 TSVEKVAKEVA 616
>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
gb|AA595092 come from this gene
Length = 234
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +1
Query: 175 KAKIYNKERRNEKIQMKKKIKAHEEKNVK---QNTEKVSEGALPVYLLDRDVQSRAKVLS 345
+A+ +++ R ++ Q ++ + + K VK + EK +E A R + K L
Sbjct: 22 EAEQKDRQTREKEEQYWREAEGPKSKAVKKREEEAEKKAETAAKKLEAKRLAEQEEKELE 81
Query: 346 NMIKQKRKEKAGKWDVPIPKV 408
+K+ K KA + VP+PKV
Sbjct: 82 KALKKPDK-KANRVTVPVPKV 101
>At5g25410.1 68418.m03014 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 369
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 202 RNEKIQMKKKIKAHEEKNVKQNTE 273
+N KIQMK + HE +N NT+
Sbjct: 60 KNHKIQMKPSVSRHELRNQTDNTK 83
>At4g01560.1 68417.m00202 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 343
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +1
Query: 175 KAKIYNKERRNEKIQMKKKIKAHE--EKNVKQNTEKVSEGALP 297
++K+Y K++ +K++ +KKI+A + EK + E+ + +P
Sbjct: 45 RSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKMIP 87
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 208 EKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQS-RAKVLSNMIKQKRKEK 375
+K+Q K++ +++N+ Q EKV+E + L +++++ KV +M K K E+
Sbjct: 270 KKLQGKEESITEQKRNLNQREEKVNEIEKKLKLKEKELEEWNRKVDLSMSKSKETEE 326
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 208 EKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQS-RAKVLSNMIKQKRKEK 375
+K+Q K++ +++N+ Q EKV+E + L +++++ KV +M K K E+
Sbjct: 283 KKLQGKEESITEQKRNLNQREEKVNEIEKKLKLKEKELEEWNRKVDLSMSKSKETEE 339
>At4g27720.1 68417.m03984 expressed protein contains Pfam PF05631:
Protein of unknown function (DUF791)
Length = 460
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 434 NTSASACALTFGIGTSHLPAFSL--RFCLIILDKTLARDWTSLSSR*TGRAP 285
N +A + FG+ + L SL R ++I+DK DWT L R T P
Sbjct: 406 NVNAFPITVMFGMCSIFLFVASLLQRRLMMIVDKPKTNDWTPLEERNTEEDP 457
>At2g41460.1 68415.m05122 apurinic endonuclease-redox protein /
DNA-(apurinic or apyrimidinic site) lyase identical to
apurinic endonuclease-redox protein SP: P45951 from
[Arabidopsis thaliana]
Length = 536
Score = 27.9 bits (59), Expect = 4.1
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Frame = +1
Query: 172 IKAKIYNKERRNEKIQMKKKIK--AHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKVLS 345
IK KI N+E E + H EK VKQ+TEK + + + ++ +S +
Sbjct: 152 IKRKISNREEPTEDECTNSEAYDIEHGEKRVKQSTEKNLKAKVSAKAIAKEQKSLMRTGK 211
Query: 346 NMIKQKRKEKAGKWDVPIPK----VRAQADAEVFKVLQSGKTKRKAWK 477
I Q ++E + + K + + + +E + VL + K +K WK
Sbjct: 212 QQI-QSKEETSSTISSELLKTEEIISSPSQSEPWTVL-AHKKPQKDWK 257
>At1g01670.1 68414.m00085 U-box domain-containing protein
Length = 365
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 RGIKAKIYNKERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGA-LPVYLLDRDVQSRAKVL 342
RGI+ Y ++RR +I+ K+ K +K + E +S + + L + +V R +V
Sbjct: 169 RGIEKMYYEEQRRRLEIEELKREKEQRDKMRRVREEALSSSSGVTKILYNEEVMRRREVE 228
Query: 343 SNMIKQK 363
+ + + K
Sbjct: 229 AELNRAK 235
>At5g60380.1 68418.m07572 hypothetical protein many predicted
proteins, Arabidopsis thaliana contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 373
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 202 RNEKIQMKKKIKAHEEKNVKQNTEKVSE------GALPVYLLDRDVQSRAKVLS 345
+N IQMK + HE KN N + + G +PV ++ ++A++L+
Sbjct: 60 KNHTIQMKPSLSRHELKNQTSNNKTYKKDIECPYGTIPVLRNTKEFNTKAQLLA 113
>At5g25890.1 68418.m03073 auxin-responsive protein / indoleacetic
acid-induced protein 28 (IAA28) identical to
SP|Q9XFM0|AXIS_ARATH Auxin-responsive protein IAA28
(Indoleacetic acid-induced protein 28) {Arabidopsis
thaliana}
Length = 175
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 199 RRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPV-YLLDRDVQSRAKVLSNMIKQKRKEK 375
RRN Q+K+++K E K+ K++ +P+ ++ + + LS+ + Q +K
Sbjct: 59 RRNLTAQLKEEMKKKESDEEKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSKK 118
Query: 376 AGKWDVPIPKVRAQADAEVFKVL 444
WD+ D E KVL
Sbjct: 119 -DSWDLNRQYTLVYEDTEGDKVL 140
>At1g41820.1 68414.m04825 hypothetical protein
Length = 401
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 195 LIVDLGFNTS*FTS-LLSPLMGFTRFFFAFPLLIIK 91
++ DL T T +L L GF+R F FPL+ +K
Sbjct: 223 IVTDLEQQTISITEPILKELFGFSRTFNVFPLVFVK 258
>At1g17070.1 68414.m02077 D111/G-patch domain-containing protein
Similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 849
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 196 ERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQS-RAKVLSNMIKQKRKE 372
+R + + KKK++ ++ EK E D++ + +V++N+ +E
Sbjct: 275 DRGGKNLWKKKKVRKAVYVTAEELLEKKQEAGFGGGQTIIDMRGPQVRVVTNLENLDAEE 334
Query: 373 KAGKWDVPIPKVR 411
KA + DVP+P+++
Sbjct: 335 KAKEADVPMPELQ 347
>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
protein identical to probable vacuolar ATP synthase
subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
Pfam PF03224: V-ATPase subunit H
Length = 441
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 157 EPSQPSYGVHALLFCVSSPHNQAVCRKAF---DGVQYI 53
+PS P+ GV + C+SS + V R +F DGV+ +
Sbjct: 164 QPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLL 201
>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
putative similar to cellulose synthase-1 [gi:9622874]
and -2 [gi:9622876] from Zea mays
Length = 1065
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +1
Query: 223 KKKIKAHEEKNVKQNTE-KVSEGALPVYLL---DRDVQSRAKVLSNMIKQKRKEK 375
+KK K+ + N + N K S+ +P++ + D DV+ +S ++ QKR EK
Sbjct: 653 RKKGKSRKIPNYEDNRSIKRSDSNVPLFNMEDIDEDVEGYEDEMSLLVSQKRLEK 707
>At2g16300.1 68415.m01866 F-box family protein contains Pfam:PF00646
F-box domain
Length = 322
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -3
Query: 336 FGTRLD-ISVK*VDRQSPFGDLFSVLFDIFLLMRFDLLFHLNLFIATFLIVDLGFNTS*F 160
FG+ L I + V +PFGD + +L ++ + +F L+ + +I +G N F
Sbjct: 73 FGSTLTKIPIYLVKFWTPFGDDY-LLAEMREREGGEPMFLLSPLSSNRIIYGMGINKVLF 131
Query: 159 TSLLSPLMGFTRFF 118
SL SP++ F +++
Sbjct: 132 NSLTSPIIPFGQYY 145
>At1g71760.1 68414.m08294 hypothetical protein
Length = 259
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/81 (18%), Positives = 37/81 (45%)
Frame = +1
Query: 175 KAKIYNKERRNEKIQMKKKIKAHEEKNVKQNTEKVSEGALPVYLLDRDVQSRAKVLSNMI 354
+ I + R++++ +KK EE+N++ YL+D + + +A +
Sbjct: 168 RRSIKKPDFRSDEVVTRKKDM--EERNLESERVTKPASKWDAYLIDDEGEHQAPPRFGVK 225
Query: 355 KQKRKEKAGKWDVPIPKVRAQ 417
K + ++ G WD + ++ +
Sbjct: 226 KALKDDEVGGWDRAVMEINTE 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,271
Number of Sequences: 28952
Number of extensions: 191023
Number of successful extensions: 688
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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