Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M05
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 239 1e-63
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 239 1e-63
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 233 9e-62
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 111 5e-25
07_03_1357 - 25982861-25983068,25983354-25983361 74 9e-14
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.26
12_02_0441 + 19115990-19116478 31 0.60
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.0
07_03_0366 + 17321948-17322331 29 1.8
02_05_1008 - 33461225-33462334 29 2.4
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.2
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 28 4.2
03_02_0167 - 6088818-6089870 28 4.2
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 28 5.6
07_03_1358 - 25984897-25984997,25985623-25985650 27 7.4
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 27 7.4
10_01_0251 + 2641320-2643272 27 9.8
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 27 9.8
05_05_0313 - 24026142-24026708 27 9.8
03_06_0653 - 35305279-35306163 27 9.8
03_05_0862 + 28353235-28354431 27 9.8
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 239 bits (584), Expect = 1e-63
Identities = 113/172 (65%), Positives = 137/172 (79%)
Frame = -1
Query: 545 KARLDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXX 366
K RLD +LK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+FEG A
Sbjct: 23 KERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRM 82
Query: 365 XXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 186
L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+
Sbjct: 83 NRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQI 142
Query: 185 VNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG +EE++
Sbjct: 143 VNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDE 194
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 239 bits (584), Expect = 1e-63
Identities = 113/172 (65%), Positives = 137/172 (79%)
Frame = -1
Query: 545 KARLDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXX 366
K RLD +LK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+FEG A
Sbjct: 46 KERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRM 105
Query: 365 XXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 186
L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+
Sbjct: 106 NRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQI 165
Query: 185 VNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG +EE++
Sbjct: 166 VNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDE 217
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 233 bits (569), Expect = 9e-62
Identities = 111/164 (67%), Positives = 132/164 (80%)
Frame = -1
Query: 545 KARLDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXX 366
K RLD +LK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R+FEG A
Sbjct: 239 KERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRM 298
Query: 365 XXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 186
L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +Q+
Sbjct: 299 NRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQI 358
Query: 185 VNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 54
VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 359 VNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 402
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 111 bits (266), Expect = 5e-25
Identities = 61/114 (53%), Positives = 74/114 (64%)
Frame = -1
Query: 545 KARLDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXX 366
K R D +LK+ GEYGLR+K E+WRV+ ELLTL+EK+P+R+FEG A
Sbjct: 23 KERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNPRRIFEGEALLRHM 71
Query: 365 XXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 204
L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 72 NRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 73.7 bits (173), Expect = 9e-14
Identities = 37/58 (63%), Positives = 43/58 (74%)
Frame = -1
Query: 203 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN +K GGG +EEE+
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN-QKASGGGGDGEEEEE 59
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 287 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>12_02_0441 + 19115990-19116478
Length = 162
Score = 31.1 bits (67), Expect = 0.60
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -1
Query: 179 IPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
+ +F++RL K I K+ GGG GR K+ KG+GGG ++EEE+
Sbjct: 108 VKTFVIRLVE-KVIGLE-KNGRGGGGGGRKKK---GKGKGGGGEDEEEEE 152
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 113 GGGRPGRVKRKNLRKGQGGG 54
G RPG RKN +GQGGG
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>07_03_0366 + 17321948-17322331
Length = 127
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 149 GKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDE 39
G ++ +S GGG R +R+ R+G GGGA E
Sbjct: 32 GDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGAMEAE 68
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.1 bits (62), Expect = 2.4
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = -1
Query: 344 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 165
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 164 VRLDSGKHIDFSLKSPFGGGR 102
+ +DSG+ + + FG GR
Sbjct: 217 L-IDSGRRVKI---ADFGVGR 233
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 305 IEDFLERRLQTQVFKAGLAKSIHHAR 228
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 273 SGVQGWSCEVNPSCPHLDQTEAY 205
+GV WS VNPS +L TEA+
Sbjct: 107 AGVSTWSLRVNPSSGNLHPTEAH 129
>03_02_0167 - 6088818-6089870
Length = 350
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 125 KSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
K P GGG GR + G+ GG ++EEED
Sbjct: 103 KLPAGGGHRGR----QVLSGRSGGGVDEEEED 130
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 110 GGRPGRVKRKNLRKGQGGGATNDEEE 33
GGRP + K + G+GG T DEEE
Sbjct: 169 GGRPAPEREKE-KAGRGGPLTGDEEE 193
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 545 KARLDQDLKIIGEYG 501
K RLD +LK++GEYG
Sbjct: 23 KERLDAELKLVGEYG 37
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 408
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>10_01_0251 + 2641320-2643272
Length = 650
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 417 LECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQVLIKT 539
LE ++ TG+ + R++ FT+V IL D+ QV +KT
Sbjct: 365 LEIKKITGNYS----RIIGKDMFTVVYSGILEDNTQVAVKT 401
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/63 (25%), Positives = 22/63 (34%)
Frame = -3
Query: 258 WSCEVNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEE 79
W P P L + SC S RPPG R +S V R + + +
Sbjct: 4 WLIRPKPISPPLSAAKTPSCSCQANSSSSALRPPGARADSVSVSPVHARGGESAAAMDSR 63
Query: 78 PAQ 70
P +
Sbjct: 64 PRE 66
>05_05_0313 - 24026142-24026708
Length = 188
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 110 GGRPGRVKRKNLRKGQGGGATNDEEED*TNKLINP 6
GG GR+ RK +G GGG E + NP
Sbjct: 22 GGGAGRMHRKGKHQGDGGGGGGKRREIKVVYIANP 56
>03_06_0653 - 35305279-35306163
Length = 294
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 146 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 54
K++ L GG+P R +R +R GGG
Sbjct: 19 KYLQRKLWKRINGGKPRRKRRPEVRSASGGG 49
>03_05_0862 + 28353235-28354431
Length = 398
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 179 IPSFIVRLDSGKHIDFSLKSPFG--GGRPGRVKRKNLRKGQGGGATNDEEE 33
IPS R ++ F ++SP G GGR G ++ + LR G DEEE
Sbjct: 247 IPSVTRRPNAYVERSFLVESPPGSAGGRRGLMQVELLRPVAASGGGEDEEE 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,530,600
Number of Sequences: 37544
Number of extensions: 295190
Number of successful extensions: 1090
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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