Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M05
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             287   3e-78
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               29   3.3  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)              28   5.7  
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  287 bits (705), Expect = 3e-78
 Identities = 137/172 (79%), Positives = 151/172 (87%)
 Frame = -1

Query: 545 KARLDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXX 366
           K RL+Q+LKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKDP+RLFEGNA     
Sbjct: 19  KERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKDPRRLFEGNALLRRL 78

Query: 365 XXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 186
                LDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQ+
Sbjct: 79  VRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQL 138

Query: 185 VNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
           VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++KGQGG    DE+ED
Sbjct: 139 VNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQGGSGGEDEDED 190


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 27/123 (21%), Positives = 54/123 (43%)
 Frame = -1

Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 351
           +++K++ +Y ++ + +  +       I+  A ++  L+ KDP R+ E             
Sbjct: 28  REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRV-EATEQILEKLHNMG 86

Query: 350 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 171
           L   +  L     +    F  RRL   +    +A+ +  A   I Q H+RV  +V+  P+
Sbjct: 87  LISTKKNLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146

Query: 170 FIV 162
           F+V
Sbjct: 147 FLV 149


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 237 SCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEE 82
           S PHL+    YS P     HSF+     L      L  +A+ ++ AR + +E
Sbjct: 306 SHPHLEAVRTYSLPFESVNHSFLLANNSLTVPVTDLRHLAITKQQARQKDQE 357


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = -1

Query: 326 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI-PSFIVRLDS 150
           D + G++  D+    L     K  +A        L  QR + V K VV     F+++ + 
Sbjct: 128 DTLRGVQKHDYARLNLDAPALKNPIALPFMRRHQLTPQRIMGVVKTVVQSNEQFVLQGNF 187

Query: 149 GKHIDFSLKSPFGGGRPGRVKRKN 78
             H+      P+GGG+ G+ K+ +
Sbjct: 188 HLHV-VRTHMPYGGGKRGKSKKNS 210


>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
          Length = 476

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 257 QP*TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS 403
           +P TP ++  +   P +SN +HN ++      LR    + V HC+  ++
Sbjct: 408 EPGTPGAKGESGGPPFASNASHNELNRTLCHTLRHSGSNTVTHCVTRVT 456


>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2557

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
 Frame = -1

Query: 500  LRNKREVWRVKYTLARIRKAARELLTLE--EKDPKR--LFEGNA----XXXXXXXXXXLD 345
            L N  E W  +   AR+R+   +L+ L+  +KD KR  + E  A               D
Sbjct: 1180 LTNTAEAWTQEQREARLRELKDKLVALDPADKDQKRSVMLEAAAIKLVSRKAHLAKSRED 1239

Query: 344  EKQMKLDYVLGLKIEDF-LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ--VVNIP 174
              ++  D V+   I D   E+  +++   A + +      I +++ HI  R Q  + N+ 
Sbjct: 1240 GSEVPRDEVMISLIADLQQEQDKESEGVLASMQEKDKDGLIALQKEHIAARAQDTLANVR 1299

Query: 173  SFIVRLDSGKHID 135
            + + R + G   D
Sbjct: 1300 AVLTRGEEGVAAD 1312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,187
Number of Sequences: 59808
Number of extensions: 309442
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)