Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M05
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   246   1e-65
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   243   5e-65
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    32   0.22 
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    31   0.50 
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    31   0.50 
At4g27150.1 68417.m03901 2S seed storage protein 2 / 2S albumin ...    28   3.5  
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    28   3.5  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    28   4.7  
At5g66700.1 68418.m08408 homeobox-leucine zipper family protein ...    27   8.2  
At4g27170.1 68417.m03903 2S seed storage protein 4 / 2S albumin ...    27   8.2  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  246 bits (601), Expect = 1e-65
 Identities = 120/176 (68%), Positives = 143/176 (81%), Gaps = 5/176 (2%)
 Frame = -1

Query: 545 KARLDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXX 366
           K RLD +LK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P+R+FEG A     
Sbjct: 23  KERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRM 82

Query: 365 XXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 186
                LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+
Sbjct: 83  NRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQL 142

Query: 185 VNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN----LRKGQGGG-ATNDEEE 33
           VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N     +K  GGG A  D+EE
Sbjct: 143 VNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGGDADGDDEE 198


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  243 bits (595), Expect = 5e-65
 Identities = 118/175 (67%), Positives = 141/175 (80%), Gaps = 4/175 (2%)
 Frame = -1

Query: 545 KARLDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXX 366
           K RLD +LK++GEYGLR KRE+WRV+YTL+RIR AARELLTL+EK+P+R+FEG A     
Sbjct: 23  KERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRM 82

Query: 365 XXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 186
                LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+
Sbjct: 83  NRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQL 142

Query: 185 VNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR----KGQGGGATNDEEE 33
           VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R    K  GG    D+EE
Sbjct: 143 VNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKASGGDGDEDDEE 197


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 311 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
           L +  F  RRL T +     A+    A   I Q H+RV  + +  P+F+V
Sbjct: 99  LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148


>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 293 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 433
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 293 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 433
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At4g27150.1 68417.m03901 2S seed storage protein 2 / 2S albumin
           storage protein / NWMU2-2S albumin 2 identical to
           SP|P15458
          Length = 170

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 95  RVKRKNLRKGQGGGATNDEEED*TNKLINPR 3
           ++ R  +R+G+GGG + D+E D  + + NP+
Sbjct: 60  KLMRMQMRQGRGGGPSLDDEFDLEDDIENPQ 90


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 287 APRSPQSSNRAHNPVSSVSH 346
           A RSP+ S++ HNP+SS  H
Sbjct: 93  ASRSPKKSHKHHNPLSSKRH 112


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -3

Query: 264  QGWSCEVNPSCPHLDQTEAYSCPQAGGEHSFVHRP 160
            QGW CEV   CP  D   A         HS + RP
Sbjct: 1515 QGWRCEV---CPDYDVCNACYSKGINHPHSIISRP 1546


>At5g66700.1 68418.m08408 homeobox-leucine zipper family protein
           similar to Homeobox-leucine zipper protein HAT5 (HD-ZIP
           protein 5) (SP:Q02283) [Arabidopsis thaliana]; contains
           Pfam PF00046: Homeobox domain
          Length = 228

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 113 GGGRPGRVKRKNLRKGQGGGATNDEE 36
           GG     VKR+  R+ +G  ATN+E+
Sbjct: 37  GGEESKPVKRRRKRRSKGSSATNEED 62


>At4g27170.1 68417.m03903 2S seed storage protein 4 / 2S albumin
           storage protein / NWMU2-2S albumin 4 identical to
           SP|P15460
          Length = 166

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 95  RVKRKNLRKGQGGGATNDEEED*TNKLINPR 3
           R  RK + +G+GGG + D+E D  + + NP+
Sbjct: 60  RWMRKQMWQGRGGGPSLDDEFDMEDDIENPQ 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,360,738
Number of Sequences: 28952
Number of extensions: 210878
Number of successful extensions: 608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)