Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M04
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    25   0.43 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   3.1  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   5.4  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 391 YSFVMRKA*ILLYCISDLERPLINKITSISL 299
           YSF++     LL  +S ++RP +   T I L
Sbjct: 26  YSFLLLTTLTLLVILSSIDRPYLKSYTYIKL 56


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 330 GRSKSLIQYNKIHAFLITKL*PNGRTL--TCRQN 425
           GR       +++HA L+T   P  R L  TCR N
Sbjct: 223 GRIVERFTSDRVHAALVTS--PRARPLARTCRDN 254


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 163 STF*TDLITPRVFFFETSVLYIHK 92
           + F  D + P +F++  SV  +H+
Sbjct: 111 AVFCRDRVNPYLFYYAFSVALLHR 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,379
Number of Sequences: 336
Number of extensions: 1542
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)