Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M04
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 2.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 4.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 4.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 4.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 4.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 4.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 4.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 4.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 4.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 4.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 4.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 4.1
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 24 9.4
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 107 DARLKKKNSRSY*VSLKRTKLFLIENSSNR 196
DA KN+RSY S+ R F++ N SNR
Sbjct: 32 DAAKANKNTRSYPYSVSRNYSFIL-NKSNR 60
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 4.1
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 409 KVRPLGY-SFVMRKA*ILLYCISDLERPLINKITSISLCTLKRWRHFL 269
K P+GY S M KA L Y +SD E I K +LK WRH+L
Sbjct: 731 KYYPVGYYSAKMSKA-QLNYSVSDKEMLAIIK-------SLKHWRHYL 770
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 43 FLTPITFLTNLLHHNTICVCIRRSSQKKK 129
FL + +L N+ H N I +RRSS KKK
Sbjct: 162 FLWLMGWLGNMYHDN-ILYDLRRSSNKKK 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,180
Number of Sequences: 5004
Number of extensions: 26777
Number of successful extensions: 52
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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