Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M04
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   3.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   3.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   3.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   3.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 295  YKEKLKLFYLSVGVP 339
            YKE +KL  L+VGVP
Sbjct: 1290 YKEDVKLPCLAVGVP 1304


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 245 FKYLNSNKFLGSNQQTNDYCYFQ*EII*YV 156
           +KY N N +  +N   N+Y   Q   I Y+
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 245 FKYLNSNKFLGSNQQTNDYCYFQ*EII*YV 156
           +KY N N +  +N   N+Y   Q   I Y+
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 245 FKYLNSNKFLGSNQQTNDYCYFQ*EII*YV 156
           +KY N N +  +N   N+Y   Q   I Y+
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 245 FKYLNSNKFLGSNQQTNDYCYFQ*EII*YV 156
           +KY N N +  +N   N+Y   Q   I Y+
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 208 FEPRNLFELRYLKRNVLKFY 267
           +E R LFEL Y  ++   FY
Sbjct: 106 YEVRMLFELLYNAKDFQTFY 125


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 208 FEPRNLFELRYLKRNVLKFY 267
           +E R LFEL Y  ++   FY
Sbjct: 106 YEVRMLFELLYNAKDFQTFY 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,281
Number of Sequences: 438
Number of extensions: 2013
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)