Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M04
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    29   1.1  
At3g24290.1 68416.m03050 ammonium transporter, putative similar ...    27   7.7  

>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +1

Query: 97  VCIRRSSQKKKLEELLSQFK 156
           +CI+ SSQ+K+LEELL + K
Sbjct: 334 LCIKESSQRKRLEELLEKEK 353


>At3g24290.1 68416.m03050 ammonium transporter, putative similar to
           SP|Q9SQH9|AT13_ARATH Ammonium transporter 1, member 3
           (AtAMT1;3) {Arabidopsis thaliana}; contains Pfam profile
           PF00909: Ammonium Transporter Family
          Length = 496

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 284 SFESTKRN*SYFIYQWAFQIA 346
           +F +   + S+F+YQWAF IA
Sbjct: 121 NFPTLTSDYSFFLYQWAFAIA 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,661,034
Number of Sequences: 28952
Number of extensions: 120787
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)