Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M03
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    27   1.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   1.9  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    26   2.5  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   2.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   4.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   4.4  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   4.4  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   5.8  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    24   7.7  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 198 DPAKVAPPPQNKLKLEWVYGYRGKDCRSNLYLLPTG--EIVYFVAA 329
           DP KVAPP     K+  +Y  +    + NLY   TG    +YF AA
Sbjct: 66  DPRKVAPPNSFLKKISLIY-QKYISPKQNLYYEATGTARYMYFEAA 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 154 PRRYILIDPSSSLYW 110
           P R++L+DPS   YW
Sbjct: 445 PSRFVLMDPSRMFYW 459


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 184 TGRSWILLKWPRRHRINSNSNGSMDTGVRIAGATCIYSQLGR 309
           T RSW LL      R +S+SNG  +  VR A  + +  ++ R
Sbjct: 13  TSRSWKLLSSTIAKRYSSSSNGVKEMTVRDALNSAMEEEMKR 54


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 152 RPAGHYVRPKRPGG 193
           RP GH+  P +PGG
Sbjct: 190 RPPGHHAEPHKPGG 203


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 261  RGKDCRSNLYLLPTGEIVYFVAAVVVLFNVEEQCQRHY 374
            +G  CR  +   P G  V   A  V +F  EE  +RH+
Sbjct: 1070 KGLACRFIISASPKGRPVAERAVPVAIFFAEESVKRHF 1107


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 206 SRIQDLPVAWAVHNDRPASEVHPH*PVLFIVLACM 102
           SRIQ L  AW + N++  S+++     + I+L CM
Sbjct: 242 SRIQTLSAAWLLLNEK--SDLNVDLCKILIILTCM 274


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 230 ILWRRGHFSRIQDLPVAWAVHNDRP 156
           I W+   F ++QDL + +  H++ P
Sbjct: 206 IFWKSSLFKKVQDLTIYYDDHDELP 230


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 145 TSEAGRSLCTAQATGRSWILLKWPRRHRINSNSNGSMDTGV 267
           T  +G   C        W+   + RRH++ SN + S  TG+
Sbjct: 196 TQPSGVLKCAGAPQKIMWMAEDYWRRHKVRSNIDVSFYTGM 236


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 100 VIEVNDIVAALMY*KS*FFFASAHINKH 17
           VIE +D+V  ++  ++  FF SAH+ ++
Sbjct: 167 VIERSDVVVQIVDARNPLFFRSAHLEQY 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,476
Number of Sequences: 5004
Number of extensions: 38380
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)