Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M03
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0247 + 2023019-2023802,2023894-2023997 30 0.79
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 27 4.2
10_08_0774 + 20478203-20479393 27 4.2
02_05_1277 - 35408097-35409080 27 4.2
03_05_0157 - 21346104-21347693 27 5.6
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 27 7.3
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 27 7.3
02_02_0616 - 12160899-12161506,12161698-12161821,12161974-121620... 27 7.3
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377... 26 9.7
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897 26 9.7
01_03_0158 + 13323191-13323436,13324052-13324102 26 9.7
>01_01_0247 + 2023019-2023802,2023894-2023997
Length = 295
Score = 29.9 bits (64), Expect = 0.79
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 269 LTPVSIDPFEFEFILWRRGHFSRIQDLPVAWA 174
LTP I P E I + SR+Q LP +WA
Sbjct: 126 LTPFKISPINRELIFLYNCNQSRLQQLPPSWA 157
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +3
Query: 60 QYINAATMSFTSITHTCQYNEEDGSMRMYLRGRPVIMYGPSDREVLDPAKVAPPPQNKLK 239
++ +A FT+I + Q +D ++ Y R + I+ +R+ APP +
Sbjct: 728 EWQQSADAQFTNINNMMQQQHDD--LQAYFRFQSSILIKDPERKPSLGGDFAPPTELLCF 785
Query: 240 LEWVYGYRGK 269
+ +YG GK
Sbjct: 786 ISLIYGVLGK 795
>10_08_0774 + 20478203-20479393
Length = 396
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 256 P*THSSLSLFCGGGATLAGSKTSRSLGPYIMTGRP 152
P T S +LF G A LAG+ P++ T P
Sbjct: 203 PDTGKSSALFLGASAKLAGAGKGAGTTPFVKTSTP 237
>02_05_1277 - 35408097-35409080
Length = 327
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 72 AATMSFTSITHTCQYNEEDGSMRMYLRGRPVIMYGPSDREVLDPAKVAPPP 224
A T + T+ T T +++GS + L + + PSD E + P PPP
Sbjct: 248 ATTAATTAATATAPDTKKEGSTSINLE-LDLNLPAPSDEESVSPPPPPPPP 297
>03_05_0157 - 21346104-21347693
Length = 529
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 272 LPEQLVSTPNWGDSVLRGSCGSAVQRRGTV--PETLHGAYG*RQM 400
LP++L + WG + +R G++ + R TV L G Y Q+
Sbjct: 56 LPDELRAAARWGAAFVRARLGASEKERHTVVIRRQLDGGYSENQL 100
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 26.6 bits (56), Expect = 7.3
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = -3
Query: 350 DVEQHYHSCHEVHYLPSWE*IQVAPAILTPVSIDPFEFEFILWRRGHFSRIQDLPVAWAV 171
+ +H+ HE H L +Q IL+P ++ + +E +L + + Q L V +
Sbjct: 98 EARSFFHTFHEDHELMHSRDLQKLEGILSPSHLE-YSYELLL---QYLQKTQAL-VVLGI 152
Query: 170 HNDRPASEVHPH*PVL 123
N+R +V P P L
Sbjct: 153 INERTTFDVSPGQPSL 168
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 177 PSDREVLDPAKVAPPPQ 227
P+ E LDP APPPQ
Sbjct: 31 PASEEALDPQTPAPPPQ 47
>02_02_0616 -
12160899-12161506,12161698-12161821,12161974-12162083,
12162119-12162271,12162545-12162779
Length = 409
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 242 RMGLWIQG*GLPEQLVSTPNW 304
R W +G GLP Q+++ P W
Sbjct: 143 RAAKWFRGVGLPWQVITWPQW 163
>10_01_0344 -
3777610-3777758,3777870-3777959,3778950-3779025,
3779206-3779288,3780456-3780799,3782064-3782113,
3782406-3782542,3782692-3782776
Length = 337
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/36 (22%), Positives = 24/36 (66%)
Frame = +3
Query: 147 LRGRPVIMYGPSDREVLDPAKVAPPPQNKLKLEWVY 254
++ + + +GP + V++ +VAPP + +++L+ ++
Sbjct: 25 IKCKAAVAHGPGEALVMEEVEVAPPARMEVRLKVLF 60
>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
Length = 922
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 168 MYGPSDREVLDPAKVAPPPQNKLKLEWVYGYRGKDCRSNLYLL 296
++ P R VLDP + PP + L+L+ CR L L+
Sbjct: 85 LHHPVFRSVLDPPDLIPPDRFALRLDDYRAASLLGCRHGLVLI 127
>01_03_0158 + 13323191-13323436,13324052-13324102
Length = 98
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/45 (42%), Positives = 19/45 (42%)
Frame = +2
Query: 137 EDVPPRPAGHYVRPKRPGGLGSC*SGPAATE*TQTRMGLWIQG*G 271
ED P P V P PGG GS S P E R L I G G
Sbjct: 2 EDFFPAPRDALVDPDTPGGSGS--SFPVPAELKSKRRRLVIPGGG 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,456
Number of Sequences: 37544
Number of extensions: 287309
Number of successful extensions: 781
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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