Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M03
(403 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 2e-15
SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16) 78 3e-15
SB_35684| Best HMM Match : HELP (HMM E-Value=0.17) 48 3e-06
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20) 48 3e-06
SB_59771| Best HMM Match : WD40 (HMM E-Value=3.9e-09) 38 0.004
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39) 30 0.61
SB_13291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.5
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19) 28 2.5
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 28 3.3
SB_35588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 5.7
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) 27 7.6
SB_10879| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88) 26 10.0
SB_8940| Best HMM Match : Toxin_23 (HMM E-Value=7.4) 26 10.0
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 78.6 bits (185), Expect = 2e-15
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = +3
Query: 198 DPAKVAPPPQNKLKLEWVYGYRGKDCRSNLYLLPTGEIVYFVAAVVVLFNVEEQCQRHYT 377
D A PP + L+LE+V+GYRG DCR+N++ TG+IVY VAA+ +++N + QR Y
Sbjct: 417 DAAPRQKPPNDGLRLEFVFGYRGYDCRNNVFYTQTGDIVYHVAALGIVYNRDTHKQRFYN 476
Query: 378 GHTDDVKC 401
HTDD+ C
Sbjct: 477 AHTDDILC 484
Score = 59.3 bits (137), Expect = 1e-09
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +3
Query: 234 LKLEWVYGYRGKDCRSNLYLLPTGEIVYFVAAVVVLFNVEEQCQRHYTGHTDDVKC 401
L LE+++GYRG D R NL+ LP+G+I+Y A ++ + Q Y HTDD+ C
Sbjct: 1019 LSLEFIHGYRGFDTRDNLHYLPSGDIIYHAAGAGIVLSTANGVQSFYLEHTDDIIC 1074
>SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)
Length = 675
Score = 77.8 bits (183), Expect = 3e-15
Identities = 33/50 (66%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 YGYRGKDCRSNLYLL-PTGEIVYFVAAVVVLFNVEEQCQRHYTGHTDDVK 398
YGYRGKDCR+NL ++ TGE+ YF AA+VVL+N+++ QRHYT HTDDVK
Sbjct: 131 YGYRGKDCRNNLVVVNETGELAYFTAAIVVLYNLKKHTQRHYTQHTDDVK 180
>SB_35684| Best HMM Match : HELP (HMM E-Value=0.17)
Length = 409
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 258 YRGKDCRSNLYLLPTGEIVYFVAAVVVLFNVEEQCQRHYTGHTDDVKC 401
Y G + +NL+ + E+V+ VAA+ +++N + QR Y GHTDD+ C
Sbjct: 348 YHGYNACNNLFYTQSNEMVFHVAALGIVYNKQNHQQRFYMGHTDDILC 395
>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
Length = 645
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 258 YRGKDCRSNLYLLPTGEIVYFVAAVVVLFNVEEQCQRHYTGHTDDVKC 401
Y G + +NL+ + E+V+ VAA+ +++N + QR Y GHTDD+ C
Sbjct: 2 YHGYNACNNLFYTQSNEMVFHVAALGIVYNKQNHQQRFYMGHTDDILC 49
>SB_59771| Best HMM Match : WD40 (HMM E-Value=3.9e-09)
Length = 204
Score = 37.5 bits (83), Expect = 0.004
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 309 IVYFVAAVVVLFNVEEQCQRHYTGHTDDVKC 401
+V+ VAA+ +++N + QR Y GHTDD+ C
Sbjct: 1 MVFHVAALGIVYNKQNHQQRFYMGHTDDILC 31
>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
Length = 574
Score = 30.3 bits (65), Expect = 0.61
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 231 KLKLEWVYGYRGKDCRSNLYLLPTGEIVYFVAAVVVLFNVEEQCQRHYTGHTDDVKC 401
+L+LE V G+ G L ++Y + VV+ ++ Q +GHTD+V C
Sbjct: 15 RLELESVIGFAGAVPNGLLVHPDRDHLIYPLGNTVVIEQIKTGKQSCLSGHTDNVTC 71
>SB_13291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 327 LPRSTLSPQLGVDTSCSGNPYPCIHRPI 244
LPRS + VDTS +G YP HRPI
Sbjct: 48 LPRSKQVAAVHVDTSRAGTVYP-FHRPI 74
>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
Length = 922
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 109 ASTMKRTGQ*GCTSEAGRSLCTAQATGRSWILLKWPRRHRINSNSNGSMDT---GVRIAG 279
A + R + GCT S + G W R+NSN+NG D G+ + G
Sbjct: 819 AEDLSRMRKAGCTFYENESTEPSNQAGSKWTKAIGSINSRLNSNANGISDASNGGMHMNG 878
Query: 280 AT 285
T
Sbjct: 879 TT 880
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 125 GRVNEDVPPRPAGHYVRPKRPGGL 196
G +++ PPRP G ++ P+ PG L
Sbjct: 829 GSMSKGPPPRPPGDHIGPQPPGTL 852
>SB_35588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1474
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 269 GLPEQLVSTPNWGDSVLRGSCGSAVQRRGTV 361
G E+LVS P+ ++ CGS +RR TV
Sbjct: 683 GTAERLVSAPSRSMAITSLLCGSTFERRTTV 713
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 99 THTCQYNEEDGSMRMY-LRGRPVIMYGPSDREVLDPAKVAP 218
T+ Y+ + R Y +RGRP I G SDR + K+ P
Sbjct: 2915 TYYVLYSNDGRRFRKYRVRGRPRIFIGNSDRNTVVIRKLKP 2955
>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
Length = 712
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 4 RGRVGVYLCGQKRKKISFFNTLTQRQCHSPRLLIHAS 114
R + ++CG+ + I+FFN + R +SP + + +
Sbjct: 375 RNALANHVCGRLTRLITFFNFTSPRTSYSPNAVAYVN 411
>SB_10879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 228 NKLKLEWVYGYRGKDCRSNLYLLPTGE 308
++L L+ Y YR DCR+ + LL T E
Sbjct: 807 SELSLDLPYTYRQSDCRTPIVLLYTQE 833
>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
Length = 697
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 96 ITHTCQYNEEDGSMRMYLRGRPVIMYGPSDREVLDPAKVAPPPQNKLKLEWVYGY 260
+ H + E++ +YL+ + I YGP E +D K + P K + +V GY
Sbjct: 423 LEHLFEDVEQESHYIIYLKAKTRIGYGPVYTERVDTIKPSAPA--KPRAPFVVGY 475
>SB_8940| Best HMM Match : Toxin_23 (HMM E-Value=7.4)
Length = 356
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 402 GI*RHPYAPCNVSGTVPRR*TALPQLPRSTLSPQ 301
GI +H YA + T + ALP + R L+PQ
Sbjct: 115 GIQKHDYARITLDATALKNPIALPFMGRHQLTPQ 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,348,605
Number of Sequences: 59808
Number of extensions: 315697
Number of successful extensions: 761
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -