Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M03
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical pr... 98 2e-21
AL032637-21|CAA21618.2| 612|Caenorhabditis elegans Hypothetical... 28 2.9
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr... 27 3.8
U64857-5|AAN84848.1| 143|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z81035-9|CAB02734.1| 628|Caenorhabditis elegans Hypothetical pr... 27 5.0
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 27 5.0
Z81088-8|CAB03130.2| 332|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 26 8.8
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 26 8.8
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 26 8.8
>Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical
protein F38A6.2 protein.
Length = 891
Score = 98.3 bits (234), Expect = 2e-21
Identities = 47/101 (46%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = +3
Query: 105 TCQYNEEDGSMRMYLRGRPVIMYGPSDREVLDPAKVAPPPQNKLKLEWVYGYRGKDCRSN 284
TCQ++ G + +++ G+ V + P+ E +DP PP K+ L+ VY YRGKD RSN
Sbjct: 237 TCQFSNGSGHLPIFIGGKTVQVPVPTGYENMDPTMDQDPPTMKVTLKHVYSYRGKDVRSN 296
Query: 285 LYLLPTGEIVYFVAAVVVLFNV--EEQCQRHYTGHTDDVKC 401
+ +LPTGE+V+F A +VVL N+ E++ QR Y GHT DVKC
Sbjct: 297 IEMLPTGELVFFSANLVVLMNITGEDRSQRIYHGHTCDVKC 337
>AL032637-21|CAA21618.2| 612|Caenorhabditis elegans Hypothetical
protein Y43F8C.3 protein.
Length = 612
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 60 QYINAATMSFTSITHTCQYNEEDGSMRM 143
+Y T F H CQY +EDG++ M
Sbjct: 372 EYTIVGTPIFAYFDHLCQYLDEDGALLM 399
>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
protein W09G3.6 protein.
Length = 1125
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +1
Query: 142 CTSEAGRSLCTAQATGRSWILLKWPRRHRINSNSNGSMDTGV 267
C + +SLC +TG +I ++ + R +NS + V
Sbjct: 50 CVASTSKSLCLGTSTGSVYIFSRYAAKSRSRTNSGAPVPVQV 91
>U64857-5|AAN84848.1| 143|Caenorhabditis elegans Hypothetical
protein C37C3.13 protein.
Length = 143
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 208 LAGSKTSRSLGPYIMTGRPRRYILIDPSSSLY 113
L T+ SLG +++TG + IDP ++Y
Sbjct: 58 LLAEGTTDSLGQFLLTGHTSEVMTIDPKLNIY 89
>Z81035-9|CAB02734.1| 628|Caenorhabditis elegans Hypothetical
protein C15H11.3 protein.
Length = 628
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 169 CTAQATGRSWILLKWPR--RHRINSNSNGSMDTGVRIA 276
C AQ G S +LK R RHR + ++ G+MD V ++
Sbjct: 420 CFAQYAGVSHNVLKQERFARHRASRSARGAMDIAVALS 457
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 134 NEDVPPRPAGHYVRPKRPGGLGSC-*SGPAATE 229
N + PP P G +P +PG +G SGP ++
Sbjct: 233 NSNGPPGPPGQMGQPGKPGSMGGLGQSGPTGSD 265
>Z81088-8|CAB03130.2| 332|Caenorhabditis elegans Hypothetical
protein F53F1.8 protein.
Length = 332
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 335 YHSCHEVHYLPSWE*IQVAPAILTPVSIDPFEFEFIL 225
YH E YL + + +Q+A ++ V + P +E+IL
Sbjct: 130 YHKLGEPWYLHTMQAVQLAGGVIAFVILWPDSYEYIL 166
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 339 ALPQLPRSTLSPQLGVDTSCSGNPYPC 259
ALP L + +S + SC G PY C
Sbjct: 10 ALPMLVSAAVSIDCSRENSCFGEPYGC 36
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 278 EQLVSTPNWGDSVLRGSCGSA 340
E L+STP GDS+L SC A
Sbjct: 785 ENLISTPVSGDSMLGDSCSIA 805
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 278 EQLVSTPNWGDSVLRGSCGSA 340
E L+STP GDS+L SC A
Sbjct: 824 ENLISTPVSGDSMLGDSCSIA 844
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,323,644
Number of Sequences: 27780
Number of extensions: 228774
Number of successful extensions: 609
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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