Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M03
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.99 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 60  QYIN-AATMSFTSITHTCQYNE 122
           Q++N AAT+SF  + H  Q N+
Sbjct: 562 QFLNTAATLSFCEMIHNAQVNK 583


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 311 YLPSWE*IQVAPAILTP 261
           +LPSW+     P IL P
Sbjct: 27  FLPSWDGKMPQPCILKP 43


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 208 KWPRRHRINSNSNGSM 255
           K PRRHR    SNG +
Sbjct: 109 KCPRRHRPVCASNGKI 124


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 144 YLRGRPVIMYGPSDREVLD 200
           YL+ +PVI  G  + +V+D
Sbjct: 474 YLKKQPVIANGSLEVDVID 492


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 347 RRGTVPETLHGA 382
           R+GTVP+  H A
Sbjct: 630 RQGTVPDETHSA 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,741
Number of Sequences: 438
Number of extensions: 2956
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)