Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M03
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36770.1 68417.m05217 UDP-glucoronosyl/UDP-glucosyl transfera... 28 2.7
At3g52490.1 68416.m05772 heat shock protein-related contains sim... 27 3.5
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 27 3.5
At2g27690.1 68415.m03355 cytochrome P450, putative similar to Cy... 27 4.7
At5g32775.1 68418.m03902 hypothetical protein 27 6.2
At5g03910.1 68418.m00371 ABC transporter family protein ABC-type... 27 6.2
At4g21970.1 68417.m03180 expressed protein contains Pfam profile... 27 6.2
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 27 6.2
At4g09775.1 68417.m01606 hypothetical protein 26 8.2
>At4g36770.1 68417.m05217 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 457
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 101 SYMPVQ*RGRVNEDVPPRPAGHYVRPKRPG 190
S++ + GRV VP P G VRP PG
Sbjct: 219 SFLDPENLGRVMRGVPVYPVGPLVRPAEPG 248
>At3g52490.1 68416.m05772 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 815
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -2
Query: 339 ALPQLPRSTLSPQLGVDTSCSGNPYPCI 256
AL +LP ST SP LGV TS P+P I
Sbjct: 76 ALNRLPTSTGSPMLGVPTS----PFPSI 99
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 216 PPPQNKLKLEWVYGYRGKDCRSNLYLLPTGEIVYFVAAVVVLFNVEEQCQRH 371
P KL L+ + G K+ + + + VY VVV+++V+ Q H
Sbjct: 10 PSSSTKLILQEIIGLTTKNANGLASVTCSSKCVYLAGCVVVVYDVDSCTQSH 61
>At2g27690.1 68415.m03355 cytochrome P450, putative similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450; supported by
cDNA: gi_13877668
Length = 495
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 154 AGRSLCTAQATGRSWILLKWPR-RHRINSNSNGSMDTGVRIAGATC 288
AGR A TG W+L + P +RI + M TG A C
Sbjct: 295 AGRDTVAAGLTGFFWLLTRHPEVENRIREELDRVMGTGFDSVTARC 340
>At5g32775.1 68418.m03902 hypothetical protein
Length = 240
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 395 DVIRMPRVMS-LALFLDVEQHYHSCHEVHY 309
D I +P + S L+L+LDVE H+H H Y
Sbjct: 127 DFIPLPDLYSTLSLYLDVEYHHHH-HSTAY 155
>At5g03910.1 68418.m00371 ABC transporter family protein ABC-type
transport protein sll1276, Synechocystis sp., PIR:S77239
Length = 634
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 241 SLSLFCGGGATLAGSKTSRSLGPYIMTGRPRRYILIDPSSSL 116
SLS+FC G LAGS S S I++ LIDP L
Sbjct: 315 SLSIFCVGAVILAGSSLSSSA---IVSFVASLAFLIDPVQDL 353
>At4g21970.1 68417.m03180 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584; expression
supported by MPSS
Length = 181
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 171 YGPSDREVLDPAKVAPPPQNKLKLEWVYGYRGKDCRSNLY 290
Y P EV AK + P N VYGY K+ S+L+
Sbjct: 45 YIPKGNEVSGGAKQSSAPMNIPDWSKVYGYSKKNTSSHLH 84
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 111 QYNE-EDGSM-RMYLRGRPVIMYGPSDREVLDPAKVAPPPQNKLKL 242
+Y E DG++ +L+ + Y R + PA+ APPP LKL
Sbjct: 505 EYGEITDGTITESHLKIEKLTHYIEHPRPIEPPAEAAPPPPQPLKL 550
>At4g09775.1 68417.m01606 hypothetical protein
Length = 141
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 177 PSDREVLDPAKVAPPPQNKLKLEWVYGY-RGKDCRSNLYLL 296
P+DR + +PPP+ LK + GY +G+D S +++
Sbjct: 51 PNDRPSGRSKEWSPPPEGYLKCNFDSGYVQGRDYTSTCWII 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,816,657
Number of Sequences: 28952
Number of extensions: 212444
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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