Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M02
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 1.3
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 27 1.3
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 1.7
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 2.2
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 2.9
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 3.9
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 25 3.9
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 3.9
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 3.9
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 6.8
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 24 6.8
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 24 6.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 24 9.0
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 24 9.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 24 9.0
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 24 9.0
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDG-SEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRTS 236
+ ++SL+K+++DS S++G PE+ S E + S+E S +S
Sbjct: 71 KTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESS 122
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 108 NDEDSDGSEQGGEPEEFQDSGEDWTPDADS 197
N D +GS++ EE GE TP+ D+
Sbjct: 91 NGVDGEGSDESSSEEEEDSDGELVTPEVDA 120
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 1.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 114 EDSDGSEQGGEPEEFQDSGEDWTPDADSNE 203
+D D SEQ EE+ D +D D D NE
Sbjct: 231 QDDDSSEQTAAFEEYDDDDDD---DVDDNE 257
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 2.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 81 MRKRKSLK-KNDEDSDGSEQGGEPEEFQDSGEDWTP 185
+ K+KSL+ K DE+ E+ + EF+D + + P
Sbjct: 107 LNKKKSLEIKYDEERSFDEKENDESEFEDGQQGFIP 142
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 2.9
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +3
Query: 72 TTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRT 233
T ++ + KN E + PE +Q + T D EP R R+RT
Sbjct: 945 TEDLERESPYGKNKEKERLIQVSELPEFYQREEPEKTTDLLQEEPLGRGARRRT 998
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 75 TNMRKRKSLKKNDED 119
T RKRK KKND+D
Sbjct: 87 TKKRKRKQKKKNDDD 101
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 69 TTTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGE 173
T++ + S+ +ND+ D S E E+F GE
Sbjct: 44 TSSGSSESDSMSQNDKKKDSSLNESEDEDFAGFGE 78
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 25.0 bits (52), Expect = 3.9
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 123 DGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRTS 236
+ + G P+ F D+ + +T + + +PR+ R T+
Sbjct: 253 EAGKNGANPDVFDDTHDKYTDNLSARAISPRAPRPSTA 290
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 87 KRKSLKKNDEDSDGSE 134
KR S+K++DE+SD SE
Sbjct: 23 KRISMKESDEESDSSE 38
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 6.8
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +3
Query: 105 KNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSG 221
+++EDS+ S++ E + E+ + + ++ + RSG
Sbjct: 95 ESEEDSEVSDESESESESESESEEESESEEESDESERSG 133
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 24.2 bits (50), Expect = 6.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 196 LMNLLPGVDAKEHLKQPLTTPKRNAKILH 282
LM G+ H Q L+TP+RN + ++
Sbjct: 1170 LMGTSQGICIPRHAGQVLSTPRRNVEFVN 1198
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 24.2 bits (50), Expect = 6.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 219 HSGEQVH*NRHPASNPHQ 166
H G+ +H R +S+PHQ
Sbjct: 115 HEGKSLHPERQTSSHPHQ 132
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 23.8 bits (49), Expect = 9.0
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Frame = +3
Query: 105 KNDEDSDGSEQ-------GGEPEEFQDSGEDWTPDADSNE 203
K+DE S GSE E EE D D D D NE
Sbjct: 233 KDDESSSGSESYERDEDVDEEEEEDDDENNDEGDDEDENE 272
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 72 TTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPD 188
T + KS + +++ SE EP + WTPD
Sbjct: 305 THETKDSKSEESKPSNNEKSENAVEPAKGNTMSFSWTPD 343
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 111 DEDSDGSEQGGEPEEFQDSGEDWTPDADS 197
DE+ DG + E EE D+ +D D D+
Sbjct: 351 DEEDDGEDLESEDEEV-DNSDDIVEDGDN 378
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 93 KSLKKNDEDSDGSEQGGEPEEFQ 161
+S KK++ED+ EQ PE+++
Sbjct: 183 ESEKKSEEDNGNGEQNYIPEQYE 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,302
Number of Sequences: 5004
Number of extensions: 19513
Number of successful extensions: 86
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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