Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M02
(374 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 30 0.47
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 30 0.62
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 29 0.82
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 29 1.1
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 29 1.4
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 29 1.4
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 29 1.4
Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 28 1.9
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 28 1.9
Z48717-3|CAA88606.1| 520|Caenorhabditis elegans Hypothetical pr... 28 2.5
AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical... 28 2.5
AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical... 28 2.5
AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical... 28 2.5
AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical ... 28 2.5
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z75525-4|CAA99761.1| 161|Caenorhabditis elegans Hypothetical pr... 27 3.3
AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical ... 27 3.3
Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical pr... 27 4.4
U49956-8|AAA93436.1| 765|Caenorhabditis elegans Hypothetical pr... 27 4.4
U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical pr... 27 4.4
U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical pr... 27 4.4
U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF067946-4|AAC17683.1| 345|Caenorhabditis elegans Hypothetical ... 27 4.4
Z81101-7|CAB03200.1| 613|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z70752-6|CAA94759.1| 613|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical p... 27 5.8
Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 5.8
Z68338-3|CAA92760.2| 105|Caenorhabditis elegans Hypothetical pr... 26 7.6
U40029-8|AAA81128.2| 275|Caenorhabditis elegans Hypothetical pr... 26 7.6
L17337-4|ABM74561.1| 217|Caenorhabditis elegans Hypothetical pr... 26 7.6
AF000261-11|AAB52931.1| 268|Caenorhabditis elegans Hypothetical... 26 7.6
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 30.3 bits (65), Expect = 0.47
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 108 NDEDSDGSEQGGEPEEFQDSGEDWTPDADSNE 203
ND+D D E+ + +E +D ED D + NE
Sbjct: 53 NDDDEDDDEEEEDEDEEEDEAEDEAEDDEENE 84
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 29.9 bits (64), Expect = 0.62
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 129 SEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRTS 236
S +GG+ +E D E+ D+ E +PR GR R S
Sbjct: 348 SSRGGDRDEVIDPTENVVGDSGVEETSPRKGRSRRS 383
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 29.5 bits (63), Expect = 0.82
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +3
Query: 93 KSLKKNDEDSDGSE-QGGEPEEFQDSGED------WTPDADSNEPAPRSGRK 227
K +KK ED + SE G EP++ DSG + + DS + P RK
Sbjct: 475 KDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSSGTGESEPDSEQDVPSKRRK 526
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 93 KSLKKNDEDSDGSE-QGGEPEEFQDSGED 176
K +KK D D SE G EP++ DSG +
Sbjct: 479 KDMKKQKNDKDSSEGSGSEPDDEYDSGSE 507
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 111 DEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGR-KRTS 236
D+D D + G + E+ D G+D D D N+ G+ K+TS
Sbjct: 271 DDDDDEKDDGNDAEK--DDGDDDDDDDDGNDDDEEDGKNKKTS 311
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 111 DEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGR-KRTS 236
D+D D + G + E+ D G+D D D N+ G+ K+TS
Sbjct: 271 DDDDDEKDDGNDAEK--DDGDDDDDDDDGNDDDEEDGKNKKTS 311
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNE 203
+K+K KK+D+D D ++ + ++ D +D D D +
Sbjct: 316 KKKKDKKKDDDDDDDEKEKKDKKKKDDKDDDEDEDKDDKK 355
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGEPEEFQDSGED 176
+K+K KKND+D + ++ + ++ D ED
Sbjct: 260 KKKKDKKKNDDDEEDKKKDKKKKKDDDDDED 290
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 102 KKNDEDSDGSEQGGEPEEFQDSGEDWTPDADS-NEPAPR 215
++++ED DGS GG E+ +D E D P PR
Sbjct: 63 EEDEEDDDGSGSGGPEEDVEDPNECADTDRKCYGNPCPR 101
>Z75547-2|CAA99909.2| 622|Caenorhabditis elegans Hypothetical
protein R11D1.1b protein.
Length = 622
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 78 NMRKRKSLKKNDEDSDG--SEQGGEPEEFQDSGEDWTPDADSNE 203
NMR+R + +DED G E G E + D+ E + ++DS++
Sbjct: 544 NMRRRFREESSDEDDSGDDGENGDENDNENDNIESSSSNSDSSD 587
>Z75547-1|CAA99908.2| 621|Caenorhabditis elegans Hypothetical
protein R11D1.1a protein.
Length = 621
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 78 NMRKRKSLKKNDEDSDG--SEQGGEPEEFQDSGEDWTPDADSNE 203
NMR+R + +DED G E G E + D+ E + ++DS++
Sbjct: 543 NMRRRFREESSDEDDSGDDGENGDENDNENDNIESSSSNSDSSD 586
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +3
Query: 66 YTTTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRTS 236
Y +K+K +DED E EE D+ E+ D D E PR RK S
Sbjct: 60 YGEKKPKKQKGSDDDDEDYVDETMPSEDEEDFDNNEEDEDDDDYEEEGPRK-RKAPS 115
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +3
Query: 66 YTTTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRTS 236
Y +K+K +DED E EE D+ E+ D D E PR RK S
Sbjct: 60 YGEKKPKKQKGSDDDDEDYVDETMPSEDEEDFDNNEEDEDDDDYEEEGPRK-RKAPS 115
>Z48717-3|CAA88606.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.5 protein.
Length = 520
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 81 MRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRT 233
+ KR + DE + G E GEP++F D D D D E ++G R+
Sbjct: 253 LTKRVEQRAADEKA-GIESSGEPQDFIDLFLDVQADTDFLEDETKNGFARS 302
>AL132902-10|CAB82002.1| 286|Caenorhabditis elegans Hypothetical
protein Y71A12B.11 protein.
Length = 286
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 96 SLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSG 221
+L + + +SD +++ E EE +D D + D+D +E G
Sbjct: 199 ALNQLEPESDAADESVEEEEEEDEDSDDSDDSDDSEEEEAEG 240
>AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical
protein C35E7.2b protein.
Length = 403
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 69 TTTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGED 176
TT K+ + DE+S+ E G + +EF ++ +D
Sbjct: 348 TTFKKPKKLHFLEPDEESESDENGNDVDEFSEADDD 383
>AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical
protein C35E7.2a protein.
Length = 707
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 69 TTTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGED 176
TT K+ + DE+S+ E G + +EF ++ +D
Sbjct: 652 TTFKKPKKLHFLEPDEESESDENGNDVDEFSEADDD 687
>AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical
protein H42K12.3 protein.
Length = 522
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 87 KRKSLKKNDEDSDGSEQGGEPEE-FQDSGEDWTPDADSNEPAPRSGR 224
+ + + ++ DS + + EPEE + DWTP SNE R R
Sbjct: 359 EEQEITEDSADSSRAIEPQEPEETYFSDWSDWTPCTKSNERQVRRRR 405
>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
protein C04A11.3 protein.
Length = 1228
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 117 DSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRK 227
D D G E Q G+ W+ +DS PA G K
Sbjct: 322 DGDEESVAGSDEISQRRGDSWSSASDSPRPATSDGFK 358
>Z75525-4|CAA99761.1| 161|Caenorhabditis elegans Hypothetical
protein C03D6.6 protein.
Length = 161
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 81 MRKRKSLKKNDEDSDGSEQGGEPEEFQDS 167
M+K ++ D DSD SE E+F+DS
Sbjct: 124 MQKEETFDPYDSDSDTSEDSDFDEDFEDS 152
>AC006627-7|AAK85463.1| 218|Caenorhabditis elegans Hypothetical
protein E01A2.6 protein.
Length = 218
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 78 NMRKRKSL-KKNDEDSDGSEQG 140
N+RKRK++ + ND D DG ++G
Sbjct: 91 NLRKRKAIPRSNDFDDDGDQRG 112
>Z75550-9|CAE54924.1| 1291|Caenorhabditis elegans Hypothetical
protein T22C1.10b protein.
Length = 1291
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSE-QGGEPEEFQDSGEDWTPDADSNEPA 209
+K K +KN E SDGSE Q E +++ E W D E A
Sbjct: 16 QKTKFERKNSESSDGSETQFCRATEKKENVEVWDDWGDKEEGA 58
>U49956-8|AAA93436.1| 765|Caenorhabditis elegans Hypothetical
protein M03A1.6a protein.
Length = 765
Score = 27.1 bits (57), Expect = 4.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 81 MRKRKSL---KKNDEDSDGSEQGGEPEEFQDSGE-DWTPDADSNEPAPRS 218
++K K+L KKN +D + G +E +D E D DA S +PRS
Sbjct: 581 LKKLKNLNKAKKNKDDKTADARSGGDDENEDEDECDSDEDARSGCSSPRS 630
>U49956-7|AAL32232.1| 753|Caenorhabditis elegans Hypothetical
protein M03A1.6b protein.
Length = 753
Score = 27.1 bits (57), Expect = 4.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 81 MRKRKSL---KKNDEDSDGSEQGGEPEEFQDSGE-DWTPDADSNEPAPRS 218
++K K+L KKN +D + G +E +D E D DA S +PRS
Sbjct: 569 LKKLKNLNKAKKNKDDKTADARSGGDDENEDEDECDSDEDARSGCSSPRS 618
>U49956-6|ABD94087.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6d protein.
Length = 762
Score = 27.1 bits (57), Expect = 4.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 81 MRKRKSL---KKNDEDSDGSEQGGEPEEFQDSGE-DWTPDADSNEPAPRS 218
++K K+L KKN +D + G +E +D E D DA S +PRS
Sbjct: 578 LKKLKNLNKAKKNKDDKTADARSGGDDENEDEDECDSDEDARSGCSSPRS 627
>U49956-5|ABD94086.1| 762|Caenorhabditis elegans Hypothetical
protein M03A1.6c protein.
Length = 762
Score = 27.1 bits (57), Expect = 4.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 81 MRKRKSL---KKNDEDSDGSEQGGEPEEFQDSGE-DWTPDADSNEPAPRS 218
++K K+L KKN +D + G +E +D E D DA S +PRS
Sbjct: 578 LKKLKNLNKAKKNKDDKTADARSGGDDENEDEDECDSDEDARSGCSSPRS 627
>AF067946-4|AAC17683.1| 345|Caenorhabditis elegans Hypothetical
protein W02G9.3 protein.
Length = 345
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 96 SLKKNDEDSDGSEQGGEPEEFQDSGED 176
SLK + GSE G P E +DS ED
Sbjct: 135 SLKAPEAAPQGSEAPGNPAEAEDSDED 161
>Z81101-7|CAB03200.1| 613|Caenorhabditis elegans Hypothetical
protein F25B3.6 protein.
Length = 613
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRT 233
R+ + +D DSD + G+P S D+D+ +P + +K+T
Sbjct: 15 RRAPATSDSDSDSDAGPKPGKPLSTDSSAS----DSDAEKPQAKPAKKKT 60
>Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical
protein W09D12.1 protein.
Length = 472
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 174 PHQNLETLLAPLLVQNHQSLHRFSSMTCVYA 82
PHQN++T+ P Q +L RF S Y+
Sbjct: 51 PHQNVKTIQEPSEKQTKDALIRFQSAFLYYS 81
>Z70752-6|CAA94759.1| 613|Caenorhabditis elegans Hypothetical
protein F25B3.6 protein.
Length = 613
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRT 233
R+ + +D DSD + G+P S D+D+ +P + +K+T
Sbjct: 15 RRAPATSDSDSDSDAGPKPGKPLSTDSSAS----DSDAEKPQAKPAKKKT 60
>Z68222-10|CAA92505.3| 1701|Caenorhabditis elegans Hypothetical
protein ZK1251.9 protein.
Length = 1701
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDAD 194
R+R + +ND + GS++G + + D + PD D
Sbjct: 1477 RQRLNSSENDAELPGSDEGSDEDGDDDEDGEGDPDFD 1513
>Z68218-5|CAA92475.3| 1701|Caenorhabditis elegans Hypothetical protein
ZK1251.9 protein.
Length = 1701
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDAD 194
R+R + +ND + GS++G + + D + PD D
Sbjct: 1477 RQRLNSSENDAELPGSDEGSDEDGDDDEDGEGDPDFD 1513
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 66 YTTTNMRKRKSLKKND--EDSDGSEQGGEPEEFQDSGEDW 179
Y + NM + S + N E+ DGSE G + E + ED+
Sbjct: 1245 YASENMGQDWSAQNNQQQEEDDGSEYGSDNGELLQTDEDY 1284
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 66 YTTTNMRKRKSLKKND--EDSDGSEQGGEPEEFQDSGEDW 179
Y + NM + S + N E+ DGSE G + E + ED+
Sbjct: 1245 YASENMGQDWSAQNNQQQEEDDGSEYGSDNGELLQTDEDY 1284
>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical protein
B0464.2 protein.
Length = 1150
Score = 26.6 bits (56), Expect = 5.8
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 69 TTTNMRKRKSLKKNDEDS-DGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGR 224
TTT +K+K++ +DE S GS G + ++ G + D D ++PA + R
Sbjct: 1082 TTTKKKKKKAVVDSDEGSVSGSGSGSDNDDKPIIG--GSDDDDDDKPAGGNSR 1132
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 66 YTTTNMRKRKSLKKND--EDSDGSEQGGEPEEFQDSGEDW 179
Y + NM + S + N E+ DGSE G + E + ED+
Sbjct: 1245 YASENMGQDWSAQNNQQQEEDDGSEYGSDNGELLQTDEDY 1284
>Z68338-3|CAA92760.2| 105|Caenorhabditis elegans Hypothetical
protein T24B8.3a protein.
Length = 105
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 102 KKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNE 203
K ED++G E+G +E D ED D DS+E
Sbjct: 43 KVTKEDAEGEEEG--DDEDADDEEDEVNDEDSSE 74
>U40029-8|AAA81128.2| 275|Caenorhabditis elegans Hypothetical
protein F10G7.3 protein.
Length = 275
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 123 DGSEQGGEPEEFQDSGEDWTPDADSNEP 206
DG+EQ G E+ +D G + D +EP
Sbjct: 220 DGAEQKGADEKMEDDGANEDVDMADDEP 247
>L17337-4|ABM74561.1| 217|Caenorhabditis elegans Hypothetical
protein ZK686.4 protein.
Length = 217
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 69 TTTNMRKRKSLKKNDEDSDGSEQGGEPE 152
T RKR + K +ED D + G +PE
Sbjct: 175 TDNRKRKRDTRKDEEEDDDEDDSGLDPE 202
>AF000261-11|AAB52931.1| 268|Caenorhabditis elegans Hypothetical
protein F19B10.1 protein.
Length = 268
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 87 KRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEP 206
KR+ + +D+DSDG E E + + +D TP + P
Sbjct: 157 KRRIVVSSDKDSDGDETPTE-DNVNNDDQDVTPKKNRKPP 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,317,125
Number of Sequences: 27780
Number of extensions: 113421
Number of successful extensions: 752
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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