Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M02
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   2.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   6.3  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 72  TTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPD 188
           TTN+      + +    D +E GG  E +  S   W PD
Sbjct: 68  TTNVWLEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPD 106


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 222 VHSGEQVH*NRHPASNPHQNLETLL 148
           +  G   H + HP   P   +ET+L
Sbjct: 457 IQIGHTPHHHPHPPETPGPQVETIL 481


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 171  EDWTPDADSNEPAPRSGRKRT 233
            E+WTP   + EP  +    +T
Sbjct: 1152 ENWTPKMMAVEPTDKQANSKT 1172


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 120 SDGSEQGGEPEE 155
           SDG   GG PEE
Sbjct: 9   SDGRGNGGTPEE 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,108
Number of Sequences: 438
Number of extensions: 1305
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)