Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M02
(374 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 30 0.58
At5g60680.1 68418.m07615 expressed protein contains Pfam profile... 29 0.76
At4g11100.1 68417.m01802 expressed protein 29 0.76
At5g65490.1 68418.m08236 expressed protein similar to unknown pr... 29 1.3
At2g30480.2 68415.m03713 expressed protein 29 1.3
At2g30480.1 68415.m03712 expressed protein 29 1.3
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 28 1.8
At5g61770.3 68418.m07752 brix domain-containing protein contains... 27 3.1
At5g61770.2 68418.m07751 brix domain-containing protein contains... 27 3.1
At3g50690.1 68416.m05546 leucine-rich repeat family protein 27 3.1
At5g59610.1 68418.m07469 DNAJ heat shock N-terminal domain-conta... 27 4.1
At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1) a... 27 4.1
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 27 4.1
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf... 27 4.1
At2g40260.1 68415.m04952 myb family transcription factor contain... 27 4.1
At1g74810.1 68414.m08667 anion exchange family protein contains ... 27 4.1
At1g21610.2 68414.m02703 wound-responsive family protein similar... 27 4.1
At1g21610.1 68414.m02702 wound-responsive family protein similar... 27 4.1
At4g13550.1 68417.m02112 lipase class 3 family protein very low ... 27 5.4
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 27 5.4
At3g57910.1 68416.m06455 D111/G-patch domain-containing protein ... 27 5.4
At3g50430.1 68416.m05516 expressed protein 27 5.4
At3g26680.2 68416.m03336 DNA cross-link repair protein-related c... 27 5.4
At3g26680.1 68416.m03335 DNA cross-link repair protein-related c... 27 5.4
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 27 5.4
At1g12830.1 68414.m01490 expressed protein 27 5.4
At5g63740.1 68418.m08000 zinc finger protein-related 26 7.1
At5g61770.1 68418.m07750 brix domain-containing protein contains... 26 7.1
At5g22050.2 68418.m02568 protein kinase family protein contains ... 26 7.1
At5g22050.1 68418.m02567 protein kinase family protein contains ... 26 7.1
At4g29950.2 68417.m04261 microtubule-associated protein identica... 26 7.1
At4g29950.1 68417.m04260 microtubule-associated protein identica... 26 7.1
At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family pr... 26 7.1
At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family pr... 26 7.1
At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family pr... 26 7.1
At4g19550.1 68417.m02875 expressed protein 26 7.1
At4g15980.1 68417.m02426 pectinesterase family protein contains ... 26 7.1
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 26 7.1
At3g57930.1 68416.m06457 expressed protein 26 7.1
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 26 7.1
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 26 7.1
At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein lo... 26 7.1
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d... 26 7.1
At1g06900.1 68414.m00733 peptidase M16 family protein / insulina... 26 7.1
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 26 9.4
At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04... 26 9.4
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 26 9.4
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 26 9.4
At3g47910.1 68416.m05224 expressed protein low similarity to non... 26 9.4
At1g61750.1 68414.m06964 expressed protein contains Pfam profile... 26 9.4
At1g54380.1 68414.m06200 spliceosome protein-related contains Pf... 26 9.4
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai... 26 9.4
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 29.9 bits (64), Expect = 0.58
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 90 RKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRK 227
+K+ + N + G+P SGE W D+ +PAP+S K
Sbjct: 1227 KKTARANFVCGACGQSTGKPSSSDLSGEVWLTPIDNKKPAPKSATK 1272
>At5g60680.1 68418.m07615 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 163
Score = 29.5 bits (63), Expect = 0.76
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = +3
Query: 87 KRKSLKKNDEDSDGSEQGGE---PEEF 158
+R+S++ ND+D D +E GG+ P EF
Sbjct: 98 RRRSIEDNDDDDDDNEDGGDWLPPHEF 124
>At4g11100.1 68417.m01802 expressed protein
Length = 287
Score = 29.5 bits (63), Expect = 0.76
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 75 TNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRTS 236
+N+ +S +N E+ +G +G E + SGE +TP +N P P S +S
Sbjct: 202 SNISSHRSGDRNQEE-EGRNRGNSATENRASGETFTP-VSANHPPPFSPSSSSS 253
>At5g65490.1 68418.m08236 expressed protein similar to unknown
protein (dbj BAA75199.1)
Length = 643
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 111 DEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRS 218
D+DSDGSE +F D ED + +SNE A S
Sbjct: 515 DDDSDGSEGSSMDMDFDDV-EDDSEGEESNEDAKES 549
>At2g30480.2 68415.m03713 expressed protein
Length = 566
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 75 TNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRK 227
TN R+RK + N + G ++ + FQ+S EDW D + RSG++
Sbjct: 363 TNTRQRKR-ETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQ 412
>At2g30480.1 68415.m03712 expressed protein
Length = 621
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 75 TNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRK 227
TN R+RK + N + G ++ + FQ+S EDW D + RSG++
Sbjct: 363 TNTRQRKR-ETNKFSNLGDKKYINTDLFQESWEDWEVDDQHMKRQVRSGKQ 412
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 93 KSLKKNDEDSDGSEQGGEPEEFQDSGED--WTPDADSNE 203
+ LKK++E++D E+ E E+ D +D DAD E
Sbjct: 275 RKLKKDEEEADEDEESEEEEDDDDDDDDDDEEEDADEEE 313
>At5g61770.3 68418.m07752 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 346
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 66 YTTTNMRKRKSLKKND-EDSDGSEQGGEPEEFQDSGEDWTPD 188
Y + +K K KK D E+ + SE+ GE E ++ GED D
Sbjct: 303 YEDVDGKKEKLKKKQDEEEEEDSEEEGE-EGSEEDGEDMDED 343
>At5g61770.2 68418.m07751 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 346
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 66 YTTTNMRKRKSLKKND-EDSDGSEQGGEPEEFQDSGEDWTPD 188
Y + +K K KK D E+ + SE+ GE E ++ GED D
Sbjct: 303 YEDVDGKKEKLKKKQDEEEEEDSEEEGE-EGSEEDGEDMDED 343
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 102 KKNDEDSDGSEQGGEPEE-FQDSGEDWTPDADSNEPAPRSG 221
++ D+D DG + GE ++ +D GE D D E SG
Sbjct: 334 EQGDDDEDGDGETGEDDQGVEDDGEFADEDDDVEEEDEESG 374
>At5g59610.1 68418.m07469 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9UXR9 Chaperone
protein dnaJ (Heat shock protein 40 Methanosarcina
thermophila, SP|Q9QYI6 DnaJ homolog subfamily B member 9
Mus musculus; contains Pfam profile PF00226 DnaJ domain
Length = 268
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 93 KSLKKNDEDSDGSEQGGEPEEFQDSGED 176
K L +DED++GS + GE +F++ +
Sbjct: 206 KELNISDEDNEGSSKNGERFDFEEGSTE 233
>At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1)
annotation temporarily based on supporting cDNA
gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1
splice variant S and SWITCH1 splice variant L (SWI1)
GI:16033413 and GI:16033410
Length = 639
Score = 27.1 bits (57), Expect = 4.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 87 KRKSLKKNDEDSDGSEQGGEPEEFQD 164
K + ++K ++D DG+E GG +E ++
Sbjct: 223 KEEEMEKEEDDDDGNEIGGTKQEAKE 248
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 96 SLKKNDEDSDGSEQ-GGEPEEFQDSGED 176
S K NDE+ GSE+ G + +EF + E+
Sbjct: 135 SEKSNDEEEIGSEEDGSDSDEFHEKSEE 162
>At3g27720.1 68416.m03461 zinc finger protein-related contains
Pfam:PF01485 IBR domain
Length = 493
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 93 KSLKKNDEDSDGSEQGGEPEEFQDSGED 176
K ++ ED + E+GGE EE ++ GED
Sbjct: 94 KEEEEGGEDEE-EEEGGEDEEAEEGGED 120
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 102 KKNDEDSDGSEQGGEPEEFQDSGED 176
++ ED + E+GGE EE ++ GED
Sbjct: 88 EEEGEDKE-EEEGGEDEEEEEGGED 111
>At2g40260.1 68415.m04952 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 410
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 93 KSLKKNDEDSD-GSEQGGEPEEFQDSGEDWTPDADSNE 203
K+ KN+ED D ++ GE +E + SG D +P ++S E
Sbjct: 20 KATTKNEEDKDEEDDEEGEEDEEERSG-DQSPSSNSYE 56
>At1g74810.1 68414.m08667 anion exchange family protein contains
Pfam profile: PF00955 Anion exchanger family
Length = 683
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 87 KRKSLKKNDEDSD-GSEQGGEPEEFQDS 167
K +KK+D+D D G E G +PE+ D+
Sbjct: 433 KEAVMKKSDDDGDTGEESGFDPEKHVDA 460
>At1g21610.2 68414.m02703 wound-responsive family protein similar to
wound-responsive protein 14.05 (GI:16506638) [Castanea
sativa]; ESTs gb T42839 and gb|AA395192 come from this
gene
Length = 683
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 81 MRKRKSLKKNDEDSDGSEQGGEPEEFQ-DSGEDWTPDADSNE 203
+ K + L K ++ SDG E G P++ + D+ + + DA+ +E
Sbjct: 101 IEKIERLYKGNDSSDGEELDGAPDDDEYDTEDSFIDDAELDE 142
>At1g21610.1 68414.m02702 wound-responsive family protein similar to
wound-responsive protein 14.05 (GI:16506638) [Castanea
sativa]; ESTs gb T42839 and gb|AA395192 come from this
gene
Length = 684
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 81 MRKRKSLKKNDEDSDGSEQGGEPEEFQ-DSGEDWTPDADSNE 203
+ K + L K ++ SDG E G P++ + D+ + + DA+ +E
Sbjct: 101 IEKIERLYKGNDSSDGEELDGAPDDDEYDTEDSFIDDAELDE 142
>At4g13550.1 68417.m02112 lipase class 3 family protein very low
similarity to diacylglycerol lipase [Aspergillus oryzae]
GI:1772352; contains Pfam profiles PF01764: Lipase
(class 3), PF00168: C2 domain
Length = 785
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 66 YTTTNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSG 170
+ +TN+ L K D+D DG G E E+ +SG
Sbjct: 295 HRSTNLSSSGKLSK-DKDGDGDGHGNELEDDNESG 328
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRT 233
++R SLK +D +S G + +E S D D + R GR+RT
Sbjct: 30 KRRMSLKASDFESSSRSGGSKSKEDNKSVVD-VEHQDRDSKRERDGRERT 78
>At3g57910.1 68416.m06455 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 265
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 102 KKNDEDSDGSEQGGEPEEFQDSGED 176
KKN+ED DG E EE + + ED
Sbjct: 201 KKNEEDEDGKPDEEEEEEEEITEED 225
>At3g50430.1 68416.m05516 expressed protein
Length = 642
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 161 LKLFWLPSLFRTIRVFIVFLQ*LAFTH 81
+ LF L +LF +R+F +FL L + H
Sbjct: 500 ITLFRLSTLFNPVRLFCIFLSELHYDH 526
>At3g26680.2 68416.m03336 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 484
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 108 NDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRK 227
ND+ + E+ G +F +G DW+ + E S +K
Sbjct: 34 NDDVEENEEEEGFASDFYKAGSDWSCLVEDEETVSSSVKK 73
>At3g26680.1 68416.m03335 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 484
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 108 NDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRK 227
ND+ + E+ G +F +G DW+ + E S +K
Sbjct: 34 NDDVEENEEEEGFASDFYKAGSDWSCLVEDEETVSSSVKK 73
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 108 NDEDSDGSEQGGEPEEFQDSGED 176
++ED DG + G E E+ DS ED
Sbjct: 224 DEEDFDGDDDGDEEEKEGDSDED 246
>At1g12830.1 68414.m01490 expressed protein
Length = 213
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 105 KNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRTS 236
++D D D ++G + ++ D +D + D + P R+R+S
Sbjct: 143 EDDSDDDEDDEGFDEDDESDFSDDPLAEVDLDNILPSRTRRRSS 186
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 111 DEDSDGSEQGGEPEEFQDSGEDWTPDADSNE 203
DED D E + ++ D +D DAD +E
Sbjct: 80 DEDEDEDEDEDDDDDDDDDDDDDADDADDDE 110
>At5g61770.1 68418.m07750 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 345
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 84 RKRKSLKKND-EDSDGSEQGGEPEEFQDSGEDWTPD 188
+K K KK D E+ + SE+ GE E ++ GED D
Sbjct: 308 KKEKLKKKQDEEEEEDSEEEGE-EGSEEDGEDMDED 342
>At5g22050.2 68418.m02568 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 307
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 175 IGRRMPILMNLLPGVDAKEHLKQPLTTP 258
IGR+ ++ + + KEHL PL TP
Sbjct: 106 IGRKRLLVFDNIENGSLKEHLNDPLKTP 133
>At5g22050.1 68418.m02567 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 299
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 175 IGRRMPILMNLLPGVDAKEHLKQPLTTP 258
IGR+ ++ + + KEHL PL TP
Sbjct: 106 IGRKRLLVFDNIENGSLKEHLNDPLKTP 133
>At4g29950.2 68417.m04261 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 703
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 192 RHPASNPHQNLETLLAPLLVQNHQSLHRFSSMTCVY 85
+HP Q + LLAPLL H + R S + Y
Sbjct: 12 KHPEYGYRQGMHELLAPLLYVLHVDVDRLSEVRKSY 47
>At4g29950.1 68417.m04260 microtubule-associated protein identical
to microtubule-associated protein GI:5032258 from
[Arabidopsis thaliana]; similar to TBC1 domain family
member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
Pfam profile PF00566: TBC domain
Length = 828
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 192 RHPASNPHQNLETLLAPLLVQNHQSLHRFSSMTCVY 85
+HP Q + LLAPLL H + R S + Y
Sbjct: 137 KHPEYGYRQGMHELLAPLLYVLHVDVDRLSEVRKSY 172
>At4g28706.3 68417.m04105 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 403
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 115 KTLMVLNKEGSQKSFKILVRIGRRMPILMNLLPGVD 222
+T +V+ KE S+K ILV ++ L +LLP D
Sbjct: 192 ETALVIAKEASRKKIPILVDTEKKRDGLDDLLPFAD 227
>At4g28706.2 68417.m04104 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 404
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 115 KTLMVLNKEGSQKSFKILVRIGRRMPILMNLLPGVD 222
+T +V+ KE S+K ILV ++ L +LLP D
Sbjct: 192 ETALVIAKEASRKKIPILVDTEKKRDGLDDLLPFAD 227
>At4g28706.1 68417.m04103 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 401
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 115 KTLMVLNKEGSQKSFKILVRIGRRMPILMNLLPGVD 222
+T +V+ KE S+K ILV ++ L +LLP D
Sbjct: 190 ETALVIAKEASRKKIPILVDTEKKRDGLDDLLPFAD 225
>At4g19550.1 68417.m02875 expressed protein
Length = 212
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 102 KKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRK 227
K+N E+S Q E EE + DW D SNE A R +
Sbjct: 148 KQNSEESLLKSQYSEEEEEEAEEPDWNEDY-SNEDAYRGNEE 188
>At4g15980.1 68417.m02426 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 701
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 114 EDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRTS 236
++S GS Q P E T D+ N+P S ++S
Sbjct: 230 DESVGSSQDSPPNEDSSDDSPSTVDSSENQPVDSSSENQSS 270
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 102 KKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNE 203
++ +ED GSE GGE Q+ GE T D E
Sbjct: 471 EEEEEDEGGSEDGGEGS--QNEGELKTEDGGEEE 502
>At3g57930.1 68416.m06457 expressed protein
Length = 141
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKR 230
R +K +K DE+ + E + +E +D +D S E +GRKR
Sbjct: 35 RPQKPVK--DEEEEEEELVKKTDEEEDKDDDTNGSVTSKENVTENGRKR 81
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 180 SNPHQNLETLLAPLLVQNHQ 121
S+ HQ LET + P+L++ H+
Sbjct: 18 SSSHQTLETRMRPILMKGHE 37
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 114 EDSDGSEQGGEPEEFQDSGEDWTPDADSNE 203
ED + E+G E EE S + D+DS E
Sbjct: 138 EDENEKEEGSEKEESGSSSQTLGSDSDSEE 167
>At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 840
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 192 RHPASNPHQNLETLLAPLLVQNHQSLHRFSSMTCVY 85
+HP Q + LLAPLL H + R S + Y
Sbjct: 141 KHPEYGYRQGMHELLAPLLYVLHVDIMRLSEVRKSY 176
>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q9P6R9 Cell cycle
control protein cwf22 {Schizosaccharomyces pombe};
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 900
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/51 (19%), Positives = 25/51 (49%)
Frame = +3
Query: 81 MRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRKRT 233
M+++K + +++ S + E +SG + +D ++ R R+R+
Sbjct: 850 MQRQKQVAESESGSSSGSDSSDSESESESGSSSSSSSDESDREKRKRRRRS 900
>At1g06900.1 68414.m00733 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain; similar to insulin-degrading enzyme
(Insulysin, Insulinase, Insulin protease) [Mouse]
SWISS-PROT:Q9JHR7
Length = 1023
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 111 DEDSDG-SEQGGEPEEFQDSGEDWTPDADSNE 203
+EDSDG SE + E+ ++ GE D D +E
Sbjct: 62 EEDSDGSSEDDDDDEDDEEDGEGDEEDEDEDE 93
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 103 RKTMKTLMVLNKEGSQKSFKILVRIG 180
+K M + +NK GSQK F+ ++R G
Sbjct: 1131 KKLMLDQLFVNKSGSQKEFEDILRWG 1156
>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 607
Score = 25.8 bits (54), Expect = 9.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +3
Query: 108 NDEDSDGSEQGGEPEEFQDSGED 176
+D+D DG + G + ++ D G+D
Sbjct: 566 DDDDDDGDDDGDDDDDDGDDGDD 588
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 25.8 bits (54), Expect = 9.4
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 84 RKRKSLKK---NDEDSDGSEQGGEPEEFQDSGEDWTPDADSNE 203
+K K KK ND+D + + ++ D +D D D NE
Sbjct: 114 KKHKDKKKDGHNDDDDSDDDTDDDDDDDDDDDDDDEVDGDDNE 156
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +3
Query: 105 KNDEDSDGSEQ-GGEPEEFQDSG----EDWTPDADSNE 203
K D+D+DGSE+ + ++ ++SG E T ++DS E
Sbjct: 130 KQDDDADGSEEDSSDDDDSENSGDEEEEKVTAESDSEE 167
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 111 DEDSDGSEQGGEPEEFQDSGEDWTPDADS 197
DE G G + F+D+ D TPD D+
Sbjct: 461 DEFHSGDNMDGGDDCFKDAWNDTTPDGDT 489
>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
PF01657 domain of unknown function
Length = 352
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 43 TYLLLVCYIQLQICVNASH*RKTMKTLM-VLNKEGSQKSF 159
TYLL CY N+S+ + + TL+ VL+ + S K F
Sbjct: 28 TYLLSYCYTSGNYTPNSSY-KSNLDTLISVLDSQSSNKGF 66
>At1g54380.1 68414.m06200 spliceosome protein-related contains Pfam
domain, PF04938: Survival motor neuron (SMN) interacting
protein 1 (SIP1)
Length = 515
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 84 RKRKSLKKNDEDSDGSEQGGE-PEEFQDSGEDW 179
R R + +E++ G+E+G E PE++ D +D+
Sbjct: 250 RVRGRTESGNEENLGTEEGTEDPEDYTDDNDDY 282
>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
aminoacyl-transfer RNA synthetases class-II signature 1,
PROSITE:PS00179
Length = 766
Score = 25.8 bits (54), Expect = 9.4
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 75 TNMRKRKSLKKNDEDSDGSEQGGEPEEFQDSGEDWTPDADSNEPAPRSGRK 227
T + KRK + DE SD + G QDS E ++N+P +SG +
Sbjct: 651 TGLAKRKRFVEPDEPSDETGNGDFTMGSQDSEE------NANDPETKSGEE 695
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,946,800
Number of Sequences: 28952
Number of extensions: 104812
Number of successful extensions: 662
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -