Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M01
         (385 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5CDB4 Cluster: Transposase and inactivated derivative;...    32   3.3  

>UniRef50_A5CDB4 Cluster: Transposase and inactivated derivative;
           n=4; Orientia tsutsugamushi Boryong|Rep: Transposase and
           inactivated derivative - Orientia tsutsugamushi (strain
           Boryong) (Rickettsia tsutsugamushi)
          Length = 291

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 182 VIHIQRPKKKLT*NNINRLFFNPLSTYLAFTSAFHCFPIVLFLWVIDILIGYNSVPVSLH 361
           ++HI+  K+ L   ++    FN L  ++      HC P+  F+ +I  L  Y+   ++LH
Sbjct: 221 LLHIE-DKRLLNKRSLIEPVFNVLKKHMLLEHTRHCSPLNFFVHIIASLASYSISKLNLH 279

Query: 362 L 364
           L
Sbjct: 280 L 280


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,118,053
Number of Sequences: 1657284
Number of extensions: 5814053
Number of successful extensions: 9572
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9572
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15293670012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)