Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M01
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   1.8  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   4.1  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    24   7.1  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    24   9.4  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 290 FPIVLFLWVIDILIGYNSVPVSLHL 364
           FPI LFLW++ + + +  +    H+
Sbjct: 320 FPITLFLWMLAVYVSFLPIMTRRHI 344


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 242 FNPLSTYLAFTSAFHCFPIVLFLWVIDILIGYNSVPVSLHLQVIYDC 382
           F+P++  LA     + F   LF+W   +  G+   PV++ L +   C
Sbjct: 246 FHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSAC 292


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 329 IGYNSVPVSLHLQVIYD 379
           IG  +VP+S HL  I+D
Sbjct: 146 IGLENVPISFHLTSIFD 162


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 266 AFTSAFHCFPIVLFLWVIDILI 331
           AF  ++ CFP+V+ +++   LI
Sbjct: 514 AFFQSYLCFPVVVIVFIAHALI 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,290
Number of Sequences: 5004
Number of extensions: 27295
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)