Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M01
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0486 - 3699290-3699296,3699485-3699745,3699889-3700046,370...    28   2.2  
08_02_1279 - 25841767-25842017,25842181-25842418,25842685-258430...    27   3.8  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    27   3.8  
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272...    27   5.1  
05_04_0196 - 18964927-18965218,18965337-18965503,18966182-189663...    27   5.1  
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241...    27   6.7  

>03_01_0486 -
           3699290-3699296,3699485-3699745,3699889-3700046,
           3700265-3700469,3701285-3701574,3701648-3701810,
           3701897-3701985,3702086-3702153,3702560-3702722
          Length = 467

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 111 FILFFS*KRFSYS-YNGSIKITH*NRIAKPLCRDK 10
           FI  ++ K  S++ +  S++ TH NR+ +P CR K
Sbjct: 397 FIDLYNNKTISWNNFASSVQETHRNRVVQPSCRQK 431


>08_02_1279 -
           25841767-25842017,25842181-25842418,25842685-25843018,
           25843498-25843592,25845461-25845700
          Length = 385

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 160 YYLYQCLSNTYTEAQKKTDLK*Y*QIVF*PLEHLPGVYVSFPL 288
           Y++Y+ +  +Y  A KK  L     ++   L  L    +SFPL
Sbjct: 271 YFMYETIKTSYCRAHKKKSLSRPELLIIGALSGLTASTISFPL 313


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 293 PIVLFLWVIDILIGYNSVPVSLHLQVIYD 379
           P+     +  +++GY  +P+S H+Q++ D
Sbjct: 569 PVCFLFLITKVVVGYAVLPLSTHIQLLSD 597


>09_04_0608 +
           18924648-18924899,18926341-18926435,18926903-18927236,
           18927345-18927582,18927813-18928069
          Length = 391

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 160 YYLYQCLSNTYTEAQKKTDLK*Y*QIVF*PLEHLPGVYVSFPL 288
           Y++Y  +  +Y    KKT L     +V   L  L    +SFPL
Sbjct: 275 YFMYDTIKTSYCRLHKKTSLTRPELLVIGALSGLTASTISFPL 317


>05_04_0196 -
           18964927-18965218,18965337-18965503,18966182-18966328,
           18966419-18966650,18968087-18968241
          Length = 330

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 283 ES*RKRQVSA--QGVKKQSVNIILGQFFFGPLYMYYLNIGTSSNGAEKL 143
           E+ +KRQ+ +  QG+K +++   + QF +   Y Y+  +    +GA+ +
Sbjct: 60  EAVQKRQILSLYQGLKTKNIQSFISQFVYFYGYSYFKRLYLEKSGAKSI 108


>03_01_0307 +
           2414709-2414762,2415769-2415841,2416090-2416154,
           2416288-2416365,2416880-2416999,2418021-2418091,
           2418808-2418900,2419242-2419311,2420236-2420436,
           2421345-2421557,2422354-2422440,2422441-2422652,
           2422901-2423042,2423424-2423592,2424050-2424126,
           2424393-2424563,2425095-2425171,2425299-2425401,
           2426066-2426185,2426301-2426444,2426826-2426975,
           2427398-2427541,2427816-2427903,2428672-2428799,
           2429329-2429533,2429843-2430015,2430174-2430392,
           2430490-2430684
          Length = 1213

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 239 FFNPLSTYLAFTSAFHCFPIVLFLWVIDILIGYNSVPVSLHLQVI 373
           FF+    +L FT+ F+      +LW +DILI Y    ++ ++QV+
Sbjct: 341 FFDYEKVFLMFTTQFY------WLWTLDILIDYGH--LTTYMQVV 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,577,692
Number of Sequences: 37544
Number of extensions: 137577
Number of successful extensions: 242
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)